PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dr16022.1

Organism

Dioscorea rotundata

Taxonomic ID

55577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Dioscoreales; Dioscoreaceae; Dioscorea

Family

NF-X1

Protein Properties

Length: 818aa MW: 90729 Da PI: 8.4502

Description

NF-X1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dr16022.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-NF-X1	16.1	2.5e-05	251	269	1	19
zf-NF-X1 1 CGkHkCqklCHeGpCppCp 19 CG H C + CHeGpCppC+ Dr16022.1 251 CGLHXCPERCHEGPCPPCR 269 ******************7 PP
2	zf-NF-X1	16.6	1.7e-05	304	323	1	20
zf-NF-X1 1 CGkHkCqklCHeGpCppCpq 20 CGkH+C++ CH GpC+ Cp+ Dr16022.1 304 CGKHRCERGCHSGPCGDCPL 323 ******************95 PP

Sequence ? help Back to Top
Protein Sequence Length: 818 aa Download sequence
MMGHNHKRIT LSFPGPKISS RITREIVHRR TENLSMAPTA VFSDSESSSS GGEDSTARRL 60 EVENSILSGY LKISGHGRPD LSKIRSILSS SSSSSSSFSA CLICLDRVRP DHPIWSCSSG 120 CHAVFHLTCI QSWASQPPYR PSAASSDWPC PKCRLSYSKT LIPRSYYCFC GKVENPPVNP 180 WALPHSCGEL CERALRPECG HHCLLLCHPG PCPPCPQLVT SSCFCGSVSD VRRCAHKYFS 240 CGKPCSKPLD CGLHXCPERC HEGPCPPCRX KGVCKCACGR TKEERECCER GFQCENPCES 300 LLACGKHRCE RGCHSGPCGD CPLRGRRTCP CGKKEYKGVS CDVNVPTCGS TCEKLLSCGL 360 HRCPERCHRG PCVETCRTVL IKSCRCGSLK KEATVFQFYS RSLAIKIWCV KENVSELGIV 420 ENMLVDVAAV MGVVLLARRF VAGNFDVIII SATLRVTGHA AGLGTCAPCP LMVTIPCACG 480 ETSFEVPCGL EMNQKPPRCP KPCPIPRLCR HKSQCRMLCS NRKRFSCDNL CGNILPCGNH 540 FCTKSCHLIK TQPCLTSDAE SELAESCDEC FLPCQKVREL ACPHPCPLXC HSGNCPPCKV 600 LVKRACHCGS MVHVFECTYY NSLSDDEQQR KRSCGGPCHR KLPNCPHLCS EICHPXQCPS 660 GNQCNKKVTV RCACNNLKKE WVCHDVLKAY RNSGRDPKDI TKNQFGNGLL PCNADCASKL 720 KVAAAETELR LRKTEIIQST PNEVTKVPKR RKKREQVQEV RHXSTFQVIK TTLWKSLMFT 780 LLILVIXATA YFGYKGLFLL SDWMNELDSR RLRQHPRF

Sequence ? help Back to Top

Protein Sequence Length: 818 aa Download sequence

MMGHNHKRIT LSFPGPKISS RITREIVHRR TENLSMAPTA VFSDSESSSS GGEDSTARRL  60
EVENSILSGY LKISGHGRPD LSKIRSILSS SSSSSSSFSA CLICLDRVRP DHPIWSCSSG  120
CHAVFHLTCI QSWASQPPYR PSAASSDWPC PKCRLSYSKT LIPRSYYCFC GKVENPPVNP  180
WALPHSCGEL CERALRPECG HHCLLLCHPG PCPPCPQLVT SSCFCGSVSD VRRCAHKYFS  240
CGKPCSKPLD CGLHXCPERC HEGPCPPCRX KGVCKCACGR TKEERECCER GFQCENPCES  300
LLACGKHRCE RGCHSGPCGD CPLRGRRTCP CGKKEYKGVS CDVNVPTCGS TCEKLLSCGL  360
HRCPERCHRG PCVETCRTVL IKSCRCGSLK KEATVFQFYS RSLAIKIWCV KENVSELGIV  420
ENMLVDVAAV MGVVLLARRF VAGNFDVIII SATLRVTGHA AGLGTCAPCP LMVTIPCACG  480
ETSFEVPCGL EMNQKPPRCP KPCPIPRLCR HKSQCRMLCS NRKRFSCDNL CGNILPCGNH  540
FCTKSCHLIK TQPCLTSDAE SELAESCDEC FLPCQKVREL ACPHPCPLXC HSGNCPPCKV  600
LVKRACHCGS MVHVFECTYY NSLSDDEQQR KRSCGGPCHR KLPNCPHLCS EICHPXQCPS  660
GNQCNKKVTV RCACNNLKKE WVCHDVLKAY RNSGRDPKDI TKNQFGNGLL PCNADCASKL  720
KVAAAETELR LRKTEIIQST PNEVTKVPKR RKKREQVQEV RHXSTFQVIK TTLWKSLMFT  780
LLILVIXATA YFGYKGLFLL SDWMNELDSR RLRQHPRF

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	746	752	KVPKRRK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G05660.1	0.0	NF-X1 family protein

Link Out ? help Back to Top
Ensembl	Dr16022.1