PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dr16108.1

Organism

Dioscorea rotundata

Taxonomic ID

55577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Dioscoreales; Dioscoreaceae; Dioscorea

Family

C2H2

Protein Properties

Length: 182aa MW: 19141.7 Da PI: 9.3692

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dr16108.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	12.7	0.00038	71	93	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ykC+ C+k+F + L H +H Dr16108.1 71 YKCSVCDKTFGSYQALGGHKASH 93 9*********9999998888777 PP

Sequence ? help Back to Top
Protein Sequence Length: 182 aa Download sequence
MSVAPPGQLT SDSESWAKQR KRSKRHHRYL DHPPNEEEYL ALCLVMLARG GSGHPPVSHA 60 RSPLHQTKTL YKCSVCDKTF GSYQALGGHK ASHRKLSPAA AEDGTSSLVA ANGGRVHRCL 120 ICNKVFGSGQ ALGGHKRCHF DGTPASGGGC GGGGGGGGAV VEERRGFDLN LPVMEVMSTL 180 AL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G49930.1	9e-41	C2H2 family protein

Link Out ? help Back to Top
Ensembl	Dr16108.1