PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dr16418.1

Organism

Dioscorea rotundata

Taxonomic ID

55577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Dioscoreales; Dioscoreaceae; Dioscorea

Family

HD-ZIP

Protein Properties

Length: 225aa MW: 25036.8 Da PI: 9.2404

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dr16418.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	59.3	6.4e-19	24	82	3	57
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 k ++t+eq+e+Le++++++++ps +r++L +++ +++ +q+kvWFqNrR +ek+ Dr16418.1 24 KYVRYTAEQVEALERVYAECPKPSSIRRQQLIRECpilsNIEPKQIKVWFQNRRCREKQ 82 5678*****************************************************97 PP
2	START	30.3	9.3e-11	162	220	2	60
HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHH CS START 2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlal 60 +aee++qe ++ka+ ++ Wv+++ +++g++++ +++ s++++g a+ra+g+v ++++ Dr16418.1 162 IAEETLQEYLSKATGTAVDWVQMPGMKPGPDSIGIVAISHSCTGVAARACGLVNLEPTK 220 789**************************************************999884 PP

Sequence ? help Back to Top
Protein Sequence Length: 225 aa Download sequence
MAMAVAMRSG GSGSSLDKQL DSGKYVRYTA EQVEALERVY AECPKPSSIR RQQLIRECPI 60 LSNIEPKQIK VWFQNRRCRE KQRKESSRLQ AVNRKLTAMN KLLMEENERL QKQVSQLVHE 120 NAYMRQQLQK VSLANDTSCE SVVTTPQNPL RDASNPAGLL SIAEETLQEY LSKATGTAVD 180 WVQMPGMKPG PDSIGIVAIS HSCTGVAARA CGLVNLEPTK VTVYL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G60690.1	1e-122	HD-ZIP family protein

Link Out ? help Back to Top
Ensembl	Dr16418.1