PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dr16427.1
Organism
Dioscorea rotundata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Dioscoreales; Dioscoreaceae; Dioscorea
Family NF-YC
Protein Properties Length: 174aa    MW: 19584.3 Da    PI: 10.5599
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dr16427.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC231.7e-07761621699
      NF-YC  16 fknhelPlarikkilkade....dv.kmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivprd 99 
                ++  ++P++r+ ++++++      + ++ + +a  l+ ka e+f+ ++t   + +a++  ++++   +++++v + ++++fl d +p++
  Dr16427.1  76 VATCSFPMSRVWRLVRSEGcqgsAIdTRTTQDAVFLINKAAEMFLEKFTEDVYANAKH--KKSVAYKNLSSTVYKEKKYEFLSDFIPEK 162
                667789*******999874211123234578999***************988877765..56677789******************986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 174 aa     Download sequence    
MKSSIKKTIT KKKHMSESDD VSSARGKEKR ATMNTEEKKK SQKRPKANNK EKEKKRKGAS  60
FSSSSSSTSS TSWGAVATCS FPMSRVWRLV RSEGCQGSAI DTRTTQDAVF LINKAAEMFL  120
EKFTEDVYAN AKHKKSVAYK NLSSTVYKEK KYEFLSDFIP EKLRGEDALK AKAE
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13857KKKSQKRPKANNKEKEKKRK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07980.13e-24NF-YC family protein