PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dr16544.1

Organism

Dioscorea rotundata

Taxonomic ID

55577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Dioscoreales; Dioscoreaceae; Dioscorea

Family

MYB

Protein Properties

Length: 261aa MW: 30058.9 Da PI: 10.0549

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dr16544.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	48.7	1.8e-15	18	65	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g WT+ Ed+ll+++++ G g+W++ +++ g+ R++k+c++rw +yl Dr16544.1 18 KGQWTANEDQLLIKYIQANGEGHWNSLPQKAGLLRCPKSCRLRWMNYL 65 799***************************99**********97 PP
2	Myb_DNA-binding	50	7e-16	71	115	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg+ ++E++l+++++++lG++ W++Iar+++ gRt++++k++w+ + Dr16544.1 71 RGNIGPQEEDLIIRLHALLGNR-WSLIARRLP-GRTDNEIKNYWNCH 115 677789**************.*****.*********977 PP

Sequence ? help Back to Top
Protein Sequence Length: 261 aa Download sequence
CIFPMGRSPC CAKVGLQKGQ WTANEDQLLI KYIQANGEGH WNSLPQKAGL LRCPKSCRLR 60 WMNYLRPDIK RGNIGPQEED LIIRLHALLG NRWSLIARRL PGRTDNEIKN YWNCHLKKKL 120 KEQGFAIKEN RLSKRRNVIN YSNKNSKSRN NKIDHLKKKA DETGTKIYIP KPTRLTSTMK 180 RPDYQGNRKN DDMNKGRLSL EQGNTSDNSN STSSNAXMQH LNTLGVLEDD LLLDDEFAIN 240 DLSSLEKLFQ EYLQALNSNE D

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G49330.1	1e-61	MYB family protein

Link Out ? help Back to Top
Ensembl	Dr16544.1