PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dr16569.1

Organism

Dioscorea rotundata

Taxonomic ID

55577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Dioscoreales; Dioscoreaceae; Dioscorea

Family

YABBY

Protein Properties

Length: 255aa MW: 28351.7 Da PI: 7.5456

Description

YABBY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dr16569.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	YABBY	92	1.5e-28	17	77	6	66
YABBY 6 sseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldes 66 seq+Cyv+CnfC+t+lavsvP +slfk+vtvrCGhCt+llsvn++ +a + hl ++ Dr16569.1 17 PSEQLCYVHCNFCDTVLAVSVPCSSLFKTVTVRCGHCTNLLSVNMRGLLLPTANQLHLVHH 77 68****************************************8877766555554444332 PP
2	YABBY	118.5	1.1e-36	164	215	118	169
YABBY 118 PPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfg 169 PekrqrvPsaynrfik+eiqrika+nPdi+hreafsaaaknWahfP+ihfg Dr16569.1 164 APEKRQRVPSAYNRFIKDEIQRIKAGNPDITHREAFSAAAKNWAHFPHIHFG 215 69*************************************************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 255 aa Download sequence
MSSSSAAFSL DHLSPPPSEQ LCYVHCNFCD TVLAVSVPCS SLFKTVTVRC GHCTNLLSVN 60 MRGLLLPTAN QLHLVHHNLL DETQCPPPPP LPPSSILLDQ QNIRNTNTMP PMKRTDEDLP 120 LPPTPVVNRR EISFFDYFAF VVFNLVGCVA ALVDKQLHHC LFIAPEKRQR VPSAYNRFIK 180 DEIQRIKAGN PDITHREAFS AAAKNWAHFP HIHFGMMPDQ ALKKSSVRQQ EGDDVMLRDG 240 LYAAAAAANM GVTPF

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G45190.1	2e-70	YABBY family protein

Link Out ? help Back to Top
Ensembl	Dr16569.1