PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dr16598.1

Organism

Dioscorea rotundata

Taxonomic ID

55577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Dioscoreales; Dioscoreaceae; Dioscorea

Family

GRAS

Protein Properties

Length: 441aa MW: 48645 Da PI: 8.1657

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dr16598.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	262.7	1.3e-80	81	370	74	374
GRAS 74 sseelaalklfsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRp...egppslRiTgvgspesg.skeeleetgerLakfA 169 + l+a+k+fsevsPil+f+++t qa+le+++g+ r+HiiDfdi+ G+QW +++q+La+R+ +++psl+iT++ sp+s+ + el+ t+e+L++fA Dr16598.1 81 HPPDLSAFKAFSEVSPILQFTNFTSIQALLEELAGSPRIHIIDFDIGVGGQWSSFMQELAQRRrsgASSPSLKITAFISPNSSyHPLELHLTRENLSQFA 180 5567899***************************************************999777779******9999999********** PP GRAS 170 eelgvpfefnvlvakrledlel.eeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalf 268 +el+++fefn++ +le++++ + L+++++Ea+aVnl ++ + s ++++ +lvk+lsPk+v+ v++ +d+++ sF ++fl++++ ++l+ Dr16598.1 181 AELHIQFEFNAM---NLESFDPvSILAMSQEEAIAVNLPVSSSLGP----S----ISTIFRLVKQLSPKIVISVDHGCDRSELSFSRHFLHCFQSSMVLL 269 *******8...555555416689999*****9554444....2....457************************************** PP GRAS 269 dsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLv 368 ds++a +++ e ++k+Er+ll+++i+++v +++ e++ +Wr+ + + GF p+p+s+++++qa++ll++v+++g++ve+++ sl+l+W++ +Lv Dr16598.1 270 DSIDAA-GTTPEVAHKIERFLLQPRIESAVLGRHRF----VEKMLTWRSLFVSTGFVPLPFSNFTETQAECLLKRVQVRGFHVEKRQSSLYLYWQRGELV 364 998.7899****************999888....9999**************************************************** PP GRAS 369 svSaWr 374 svSaWr Dr16598.1 365 SVSAWR 370 ***8 PP

Sequence ? help Back to Top
Protein Sequence Length: 441 aa Download sequence
MKGMPFNLQT KGVGEEEVGG AIGGGGGRGG ARGALLLTGV KRSRGELEPR SVLDHRRSPS 60 PPTSTSTLSS SLGGGXASSD HPPDLSAFKA FSEVSPILQF TNFTSIQALL EELAGSPRIH 120 IIDFDIGVGG QWSSFMQELA QRRRSGASSP SLKITAFISP NSSYHPLELH LTRENLSQFA 180 AELHIQFEFN AMNLESFDPV SILAMSQEEA IAVNLPVSSS LGPSISTIFR LVKQLSPKIV 240 ISVDHGCDRS ELSFSRHFLH CFQSSMVLLD SIDAAGTTPE VAHKIERFLL QPRIESAVLG 300 RHRFVEKMLT WRSLFVSTGF VPLPFSNFTE TQAECLLKRV QVRGFHVEKR QSSLYLYWQR 360 GELVSVSAWR RAWSRFNFNN PSSLSTLSVY VLSNAENCNI SFVTAEFMDR LQKYASSLSC 420 GVSELIGNRI HSCRGNDQYL Y

Sequence ? help Back to Top

Protein Sequence Length: 441 aa Download sequence

MKGMPFNLQT KGVGEEEVGG AIGGGGGRGG ARGALLLTGV KRSRGELEPR SVLDHRRSPS  60
PPTSTSTLSS SLGGGXASSD HPPDLSAFKA FSEVSPILQF TNFTSIQALL EELAGSPRIH  120
IIDFDIGVGG QWSSFMQELA QRRRSGASSP SLKITAFISP NSSYHPLELH LTRENLSQFA  180
AELHIQFEFN AMNLESFDPV SILAMSQEEA IAVNLPVSSS LGPSISTIFR LVKQLSPKIV  240
ISVDHGCDRS ELSFSRHFLH CFQSSMVLLD SIDAAGTTPE VAHKIERFLL QPRIESAVLG  300
RHRFVEKMLT WRSLFVSTGF VPLPFSNFTE TQAECLLKRV QVRGFHVEKR QSSLYLYWQR  360
GELVSVSAWR RAWSRFNFNN PSSLSTLSVY VLSNAENCNI SFVTAEFMDR LQKYASSLSC  420
GVSELIGNRI HSCRGNDQYL Y

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G00150.1	4e-89	GRAS family protein

Link Out ? help Back to Top
Ensembl	Dr16598.1