PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dr16685.1

Organism

Dioscorea rotundata

Taxonomic ID

55577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Dioscoreales; Dioscoreaceae; Dioscorea

Family

MYB

Protein Properties

Length: 355aa MW: 39677 Da PI: 7.0138

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dr16685.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	54.2	3.2e-17	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g W++eEde+l++ ++++G g+W+++++ g+ R++k+c++rw +yl Dr16685.1 14 KGLWSPEEDEKLLNHITMYGHGCWSSVPKLAGLQRCGKSCRLRWINYL 61 678*******************************************97 PP
2	Myb_DNA-binding	44.5	3.5e-14	67	110	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg ++++E+ l++++++ lG++ W+ Ia+ ++ gRt++++k+ w++ Dr16685.1 67 RGTFSEQEENLIIELHAVLGNR-WSQIAAQLP-GRTDNEIKNLWNS 110 899*****************.*****.*******9986 PP

Sequence ? help Back to Top
Protein Sequence Length: 355 aa Download sequence
MGRHSCCYKQ KLRKGLWSPE EDEKLLNHIT MYGHGCWSSV PKLAGLQRCG KSCRLRWINY 60 LRPDLKRGTF SEQEENLIIE LHAVLGNRWS QIAAQLPGRT DNEIKNLWNS CIKKKLKQRG 120 IDPVTHKPLL SETEXGTAAG GEDHNKPTAA TNINDKPKLL SPASAMTTTC TTSYLPPLEL 180 MNHNQSAPSA FLWFNSQQQQ QQQQQQQQQQ ELNCNTGSFM SATPSMGGTK SVMHGVQYWE 240 GSHSSNSSAS SGIELQSNGS LIESGGIFSW SDLTSDSEAQ IHLDGEPEDL KWSEYLQGSF 300 PVSAALRGHG GQPLFDIKAE NHLLAMDDGI SASWNQNYQQ EQQTSCHPYG KHFWR

Sequence ? help Back to Top

Protein Sequence Length: 355 aa Download sequence

MGRHSCCYKQ KLRKGLWSPE EDEKLLNHIT MYGHGCWSSV PKLAGLQRCG KSCRLRWINY  60
LRPDLKRGTF SEQEENLIIE LHAVLGNRWS QIAAQLPGRT DNEIKNLWNS CIKKKLKQRG  120
IDPVTHKPLL SETEXGTAAG GEDHNKPTAA TNINDKPKLL SPASAMTTTC TTSYLPPLEL  180
MNHNQSAPSA FLWFNSQQQQ QQQQQQQQQQ ELNCNTGSFM SATPSMGGTK SVMHGVQYWE  240
GSHSSNSSAS SGIELQSNGS LIESGGIFSW SDLTSDSEAQ IHLDGEPEDL KWSEYLQGSF  300
PVSAALRGHG GQPLFDIKAE NHLLAMDDGI SASWNQNYQQ EQQTSCHPYG KHFWR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G01680.3	5e-88	MYB family protein

Link Out ? help Back to Top
Ensembl	Dr16685.1