PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dr16742.1

Organism

Dioscorea rotundata

Taxonomic ID

55577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Dioscoreales; Dioscoreaceae; Dioscorea

Family

GRF

Protein Properties

Length: 335aa MW: 37992 Da PI: 8.2701

Description

GRF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dr16742.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRC	77.3	1.5e-24	93	136	1	44
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkske 44 d+epgrCrRtDGKkWRCs++++++ k+CErH+hrg++rsrk++e Dr16742.1 93 DPEPGRCRRTDGKKWRCSKEAYPDXKYCERHMHRGKNRSRKPVE 136 79***************************************998 PP
2	QLQ	60.9	3.5e-21	21	56	2	37
QLQ 2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 +FTa+Q+q+L++Q+l++Ky+a++ P+P++L+++i++ Dr16742.1 21 PFTATQWQELEHQALIFKYMASGIPIPSDLILPIRR 56 9*********************************86 PP

Sequence ? help Back to Top
Protein Sequence Length: 335 aa Download sequence
MMMMMNGRGS SSSSSCSNRY PFTATQWQEL EHQALIFKYM ASGIPIPSDL ILPIRRSFML 60 DPSPCTTPTL AFPHQLPMGW GSYQLGYGRK AEDPEPGRCR RTDGKKWRCS KEAYPDXKYC 120 ERHMHRGKNR SRKPVEMSLA SIPTTHHSRY PTPPPPSLSI STPDSSHNLF YPYSSSSSSS 180 SSKTSTASTA STTTTRLHLD TGSYYSTENK DYRYGHGMKD VDEYSFFSES SGASRDDSWP 240 KLSSNYSNCT ADFLSKEEGE KQQQQHCFVL GADFKLEKPV KVDREEVPLR HFFDEWPQKS 300 KDSSSWMSLD DHSSSRTQLS ISIPTMASIY QYHNG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G13960.1	3e-49	GRF family protein

Link Out ? help Back to Top
Ensembl	Dr16742.1