PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dr16748.1

Organism

Dioscorea rotundata

Taxonomic ID

55577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Dioscoreales; Dioscoreaceae; Dioscorea

Family

MYB

Protein Properties

Length: 278aa MW: 31995.5 Da PI: 6.0131

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dr16748.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	54.4	2.9e-17	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+WT+eEd++l ++k +G g+W++ +++ g++R++k+c++rw++yl Dr16748.1 14 RGAWTQEEDKILSAYIKAHGEGRWRSLPSRAGLKRCGKSCRLRWLNYL 61 89********************************************97 PP
2	Myb_DNA-binding	54.7	2.4e-17	67	112	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+ ++eEd+l+++++k+lG++ W++Ia +++ gRt++++k++w+++l Dr16748.1 67 RGNISQEEDDLIIRLHKLLGNK-WSLIAGRLP-GRTDNEIKNYWNTHL 112 7899****************.*****.**********996 PP

Sequence ? help Back to Top
Protein Sequence Length: 278 aa Download sequence
MGRKPCCSRD GLRRGAWTQE EDKILSAYIK AHGEGRWRSL PSRAGLKRCG KSCRLRWLNY 60 LRPDIKRGNI SQEEDDLIIR LHKLLGNKWS LIAGRLPGRT DNEIKNYWNT HLSKTLIKHG 120 NGHDEHQNKI ETKKEKTLAI VDTNNVVRTK ARRCTSNVFI TTTPQQQQPH FDDHNEEHMN 180 TGVLLHGNEA ANGDENTGHE IESWWDALMD FNMNDDWTWM NEASSPPIHN INVAEAEGDD 240 DDDHHQVMIE SEADETRKPD LDLDLNALAA FLDWETYA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38620.1	7e-65	MYB family protein

Link Out ? help Back to Top
Ensembl	Dr16748.1