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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
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| TF ID | Dr16895.1 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Dioscoreales; Dioscoreaceae; Dioscorea
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| Family | HD-ZIP | ||||||||
| Protein Properties | Length: 256aa MW: 29343.3 Da PI: 4.8448 | ||||||||
| Description | HD-ZIP family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
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| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | Homeobox | 62.9 | 4.9e-20 | 58 | 111 | 3 | 56 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
k++++t+eq++ Le+ Fe ++++ e++ eLA+klg++ rqV vWFqNrRa++k
Dr16895.1 58 KKHRLTPEQVDLLERXFEVENKLEPERKSELARKLGVQPRQVAVWFQNRRARWK 111
67889************************************************9 PP
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| 2 | HD-ZIP_I/II | 127.7 | 5e-41 | 57 | 148 | 1 | 92 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92
ekk+rl+ eqv lLE+ Fe e+kLeperK+elar+Lg+qprqvavWFqnrRAR+ktkqlE+d+++Lk++yd+l +++++L k++++Lr+++
Dr16895.1 57 EKKHRLTPEQVDLLERXFEVENKLEPERKSELARKLGVQPRQVAVWFQNRRARWKTKQLENDFDRLKSSYDSLLDDHQSLLKDNDRLRSQVV 148
69**************************************************************************************9985 PP
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| Sequence ? help Back to Top |
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| Protein Sequence Length: 256 aa Download sequence |
MDSGRLVFDP SRCGGVLVLA ARGDPVLRDG GKKRTRSFFM SSEEVEEECY YDELLPEKKH 60 RLTPEQVDLL ERXFEVENKL EPERKSELAR KLGVQPRQVA VWFQNRRARW KTKQLENDFD 120 RLKSSYDSLL DDHQSLLKDN DRLRSQVVLL TDKLQAMESS ILRLEDHAPS SSGDIALHAE 180 LKANDCLSPK SAGSEVLGEK ARQQLIDSSV DSYFPTTYKD LGCSVGREEE NSCNFLXCEL 240 EHQQPDVGQI GWWDWS |
| Nucleic Localization Signal ? help Back to Top | |||
|---|---|---|---|
| No. | Start | End | Sequence |
| 1 | 106 | 114 | RRARWKTKQ |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT3G01470.1 | 4e-60 | HD-ZIP family protein | ||||
| Link Out ? help Back to Top | |
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| Ensembl | Dr16895.1 |
| ©2010-2022, Center
for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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