PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dr16979.1

Organism

Dioscorea rotundata

Taxonomic ID

55577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Dioscoreales; Dioscoreaceae; Dioscorea

Family

bHLH

Protein Properties

Length: 470aa MW: 52424.3 Da PI: 9.2397

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dr16979.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	25.8	1.9e-08	251	298	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++iN ++ L+el+P + sk a +L + +++++sLq Dr16979.1 251 SHSLAERARREKINARMKLLQELVPGC----SKISGTALVLDEIINHVQSLQ 298 8*************************9....788889999999999999998 PP

Sequence ? help Back to Top
Protein Sequence Length: 470 aa Download sequence
MWLRTLLSGP GFFSYTPPVA PFHCRQHRHR LHRRNLAIQS RIRAPDHGIH RDRCRIQVRF 60 ATIEDRMEPA RSTGAGSGNS GNYTPEIAET LRFEXEIQSL MRDGSSPANG SSFTALLGLP 120 PNQAVELLHE PGEIYRRSTA VLPLGCSPTF PSNTALVERA AKFSVFAAAG ESPQASNSGS 180 HAPRPKLEPV DSDSGDRPQR PVKRKDGDRN KAKPPAKKSR SGEEGAGKPS EENEKLPYVH 240 VRARRGQATD SHSLAERARR EKINARMKLL QELVPGCSKI SGTALVLDEI INHVQSLQRL 300 VEFLSMRLAA VTPRIDFSGL DSFLSAECGR VLTVGSEMGM WTEEGMGNVG RRQQEQNMCD 360 IDVVQTETEE ERQQWDRDET QDQHQHQQQP RXFIGNPATA LFAYDPVTSG MPARVSLSME 420 SLGVPIPSSV DDKLKXSNVR LDRQLEHNRW IKTKLKRGHK HQPTDVTLDV

Sequence ? help Back to Top

Protein Sequence Length: 470 aa Download sequence

MWLRTLLSGP GFFSYTPPVA PFHCRQHRHR LHRRNLAIQS RIRAPDHGIH RDRCRIQVRF  60
ATIEDRMEPA RSTGAGSGNS GNYTPEIAET LRFEXEIQSL MRDGSSPANG SSFTALLGLP  120
PNQAVELLHE PGEIYRRSTA VLPLGCSPTF PSNTALVERA AKFSVFAAAG ESPQASNSGS  180
HAPRPKLEPV DSDSGDRPQR PVKRKDGDRN KAKPPAKKSR SGEEGAGKPS EENEKLPYVH  240
VRARRGQATD SHSLAERARR EKINARMKLL QELVPGCSKI SGTALVLDEI INHVQSLQRL  300
VEFLSMRLAA VTPRIDFSGL DSFLSAECGR VLTVGSEMGM WTEEGMGNVG RRQQEQNMCD  360
IDVVQTETEE ERQQWDRDET QDQHQHQQQP RXFIGNPATA LFAYDPVTSG MPARVSLSME  420
SLGVPIPSSV DDKLKXSNVR LDRQLEHNRW IKTKLKRGHK HQPTDVTLDV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G57800.2	7e-72	bHLH family protein

Link Out ? help Back to Top
Ensembl	Dr16979.1