PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dr16987.1

Organism

Dioscorea rotundata

Taxonomic ID

55577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Dioscoreales; Dioscoreaceae; Dioscorea

Family

SBP

Protein Properties

Length: 364aa MW: 39142.1 Da PI: 9.3121

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dr16987.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	137.3	4.7e-43	65	140	1	76
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkk 76 +CqvegC++dls++k y+++hkvC +hsk+p+v+v+gleqrfCqqCsrfh+l efD++krsCrrrLa+hnerrrk+ Dr16987.1 65 RCQVEGCNVDLSDTKAYYSKHKVCGMHSKSPKVIVAGLEQRFCQQCSRFHQLPEFDQGKRSCRRRLAGHNERRRKP 140 6*************************************************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 364 aa Download sequence
MDMGSSSLPA SLACGSNDSL NGLKFGKKIY FEDGGGGGSS SKASSGQAPA KKGKIGVQGV 60 QQPPRCQVEG CNVDLSDTKA YYSKHKVCGM HSKSPKVIVA GLEQRFCQQC SRFHQLPEFD 120 QGKRSCRRRL AGHNERRRKP PPGSISRNGR LSSSGHEDSG RFRSFMMDFT YAKQXGNDRD 180 AWLANRSGNR VVGNHQWQGG LNALXSGVAA HGFGPSMRGS PNTNSAMFSV PPENSSSFRE 240 SLAGISDSSC ALSLLSTHQP RSSTTTQNQV PTVIPANASF DMSHVVQQPG MPSNYMANSW 300 EFKGPPEASG TSEAMQHPIE FSHISQPGNQ RFSGELELAF QGSKLGMNLD PALAFADDAT 360 HWSL

Sequence ? help Back to Top

Protein Sequence Length: 364 aa Download sequence

MDMGSSSLPA SLACGSNDSL NGLKFGKKIY FEDGGGGGSS SKASSGQAPA KKGKIGVQGV  60
QQPPRCQVEG CNVDLSDTKA YYSKHKVCGM HSKSPKVIVA GLEQRFCQQC SRFHQLPEFD  120
QGKRSCRRRL AGHNERRRKP PPGSISRNGR LSSSGHEDSG RFRSFMMDFT YAKQXGNDRD  180
AWLANRSGNR VVGNHQWQGG LNALXSGVAA HGFGPSMRGS PNTNSAMFSV PPENSSSFRE  240
SLAGISDSSC ALSLLSTHQP RSSTTTQNQV PTVIPANASF DMSHVVQQPG MPSNYMANSW  300
EFKGPPEASG TSEAMQHPIE FSHISQPGNQ RFSGELELAF QGSKLGMNLD PALAFADDAT  360
HWSL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G42200.1	6e-55	SBP family protein

Link Out ? help Back to Top
Ensembl	Dr16987.1