PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dr17149.1
Organism
Dioscorea rotundata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Dioscoreales; Dioscoreaceae; Dioscorea
Family M-type_MADS
Protein Properties Length: 253aa    MW: 29123.5 Da    PI: 5.4547
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dr17149.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF49.36.1e-164588346
               --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEE CS
     SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgkl 46
               ie +s r++t+ kR+ng+lKK  ELS LCd++++ ii+   g++
  Dr17149.1 45 IEXDSSRNITYKKRKNGLLKKXRELSALCDVKACAIIYPWGGNV 88
               8999*********************************9776665 PP
Sequence ? help Back to Top
Protein Sequence    Length: 253 aa     Download sequence    
MDLGFRCFDE RRRLVPIHRQ HVYDEDSEEE DDFEPNWVKV KLAWIEXDSS RNITYKKRKN  60
GLLKKXRELS ALCDVKACAI IYPWGGNVPE VWSSTPDPMD VLVPFMQKPE LERRKKMVNQ  120
VRFLQQQIMK LEEHALKQEK ENNELENMVL LGQCLKGKDL HGLYLETISS LNWLVDNKLK  180
LVKEKVVKKK AEMAANGEGS LTTSAVGMHG WCLGFNEHNV IGGEKFGQPS CGNINNDDGD  240
DDNIAWLDGF FXD
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48670.17e-19M-type_MADS family protein