PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dr17150.1
Organism
Dioscorea rotundata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Dioscoreales; Dioscoreaceae; Dioscorea
Family M-type_MADS
Protein Properties Length: 131aa    MW: 14790.7 Da    PI: 10.3026
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dr17150.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF45.59.7e-151156348
               --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEE CS
     SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklye 48
               ie     +vt+ kR+ng+lKK + LS+LC+++v+ ii+   g++ e
  Dr17150.1 11 IEKAAPMNVTYKKRKNGLLKKVKDLSTLCNVKVCGIIYPCGGTVSE 56
               55566678******************************98888876 PP
Sequence ? help Back to Top
Protein Sequence    Length: 131 aa     Download sequence    
MGRAKVKLAW IEKAAPMNVT YKKRKNGLLK KVKDLSTLCN VKVCGIIYPC GGTVSEVWSS  60
TPNLMDVLVP FMQESQLERR KKMVNQCLEG KDISVLDLET IFSLSWLVDN KLNFVKEKVV  120
KKKAKMVANG E
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G65300.11e-11M-type_MADS family protein