PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dr17156.1

Organism

Dioscorea rotundata

Taxonomic ID

55577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Dioscoreales; Dioscoreaceae; Dioscorea

Family

HD-ZIP

Protein Properties

Length: 231aa MW: 25524.7 Da PI: 8.6084

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dr17156.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	58.4	1.2e-18	76	129	3	56
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k+ +++keq + Lee F++n++++ +++e LA++l+L rqV vWFqNrRa+ k Dr17156.1 76 KKLRLSKEQSRLLEESFRQNHTLNPKQKEALATRLKLRPRQVEVWFQNRRARTK 129 67789***********************************************98 PP
2	HD-ZIP_I/II	120.7	7.5e-39	76	163	2	90
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLree 90 kk+rlskeq++lLEesF+++++L+p++K++la++L+l+prqv+vWFqnrRARtk+kq+E+++e+Lkr + +l+een+rL++eveeLr + Dr17156.1 76 KKLRLSKEQSRLLEESFRQNHTLNPKQKEALATRLKLRPRQVEVWFQNRRARTKLKQTEMECEYLKRXFGSLTEENRRLQREVEELR-A 163 9*************************************************************************************9.4 PP

Sequence ? help Back to Top
Protein Sequence Length: 231 aa Download sequence
MEDLGRGGPS GLELTIAVPG MSSSSGSEGG VGVGGGCIMR DLDMNYPPAA EMEEEYPMGS 60 VEDEDEGGCG GGGRPKKLRL SKEQSRLLEE SFRQNHTLNP KQKEALATRL KLRPRQVEVW 120 FQNRRARTKL KQTEMECEYL KRXFGSLTEE NRRLQREVEE LRALRMAPPT VLSPHTREPM 180 PASALTMCPR CERVTTASGS SQRHHAVRPG VAAFQRSPAS PFQPRQPSAA C

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	124	132	RRARTKLKQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G01430.1	3e-60	HD-ZIP family protein

Link Out ? help Back to Top
Ensembl	Dr17156.1