PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dr17238.1

Organism

Dioscorea rotundata

Taxonomic ID

55577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Dioscoreales; Dioscoreaceae; Dioscorea

Family

SBP

Protein Properties

Length: 348aa MW: 38602.4 Da PI: 8.6592

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dr17238.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	130.3	7e-41	77	153	2	78
-SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 C v+gC +dls+++eyhrrhkvCe+hsk+++v+vsg+eqrfCqqCsrfh l+efDe krsCr+rL++hn+rrrk+q+ Dr17238.1 77 CLVDGCMSDLSKCREYHRRHKVCETHSKTQMVIVSGKEQRFCQQCSRFHLLTEFDEVKRSCRKRLDGHNRRRRKPQP 153 **************************************************************************987 PP

Sequence ? help Back to Top
Protein Sequence Length: 348 aa Download sequence
MPSWDFVEVE QCAGPNIGSL DCSVDLKLGG LCDDWNKKKN KKDSQINMAE IADMSSGSGS 60 SKKARTPNNN GRQIASCLVD GCMSDLSKCR EYHRRHKVCE THSKTQMVIV SGKEQRFCQQ 120 CSRFHLLTEF DEVKRSCRKR LDGHNRRRRK PQPDSLNSAT FFTNHQGGRF TSYSPMYPMT 180 AQSPAWPGII KIENKPLYPN QQQLSFISKQ EELPNSFSIS FKDGKKFPFL QYGNTEDSVS 240 TRQNSGFKAF PDGIARRALS LLSSPTQAAA MNFGQMVAGD YIPFGQPLIS NLPYSGLAQY 300 SSAQASSSVS PPPGLSCSGI TDNHGSISLV SDSTNTDLHC HTDLPFWQ

Sequence ? help Back to Top

Protein Sequence Length: 348 aa Download sequence

MPSWDFVEVE QCAGPNIGSL DCSVDLKLGG LCDDWNKKKN KKDSQINMAE IADMSSGSGS  60
SKKARTPNNN GRQIASCLVD GCMSDLSKCR EYHRRHKVCE THSKTQMVIV SGKEQRFCQQ  120
CSRFHLLTEF DEVKRSCRKR LDGHNRRRRK PQPDSLNSAT FFTNHQGGRF TSYSPMYPMT  180
AQSPAWPGII KIENKPLYPN QQQLSFISKQ EELPNSFSIS FKDGKKFPFL QYGNTEDSVS  240
TRQNSGFKAF PDGIARRALS LLSSPTQAAA MNFGQMVAGD YIPFGQPLIS NLPYSGLAQY  300
SSAQASSSVS PPPGLSCSGI TDNHGSISLV SDSTNTDLHC HTDLPFWQ

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	134	151	KRSCRKRLDGHNRRRRKP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G50670.1	2e-46	SBP family protein

Link Out ? help Back to Top
Ensembl	Dr17238.1