PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dr17259.1
Organism
Dioscorea rotundata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Dioscoreales; Dioscoreaceae; Dioscorea
Family M-type_MADS
Protein Properties Length: 278aa    MW: 31226.5 Da    PI: 5.9436
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dr17259.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF306.8e-101242043
               HHHHHHHHHHHHT-EEEEEEE-TT CS
     SRF-TF 20 ilKKAeELSvLCdaevaviifsst 43
               +lKK +ELSvLCd++++ i++s++
  Dr17259.1  1 MLKKTKELSVLCDVKACAIVYSPD 24
               59********************98 PP
Sequence ? help Back to Top
Protein Sequence    Length: 278 aa     Download sequence    
MLKKTKELSV LCDVKACAIV YSPDEYRPEV WPPEPERVMR VLSSFKSLPE MEKSKKMLNQ  60
EGFLRQRISK TQEQLQKLEK DNRESRTKLL MLQGLDGNNG SRIMHALTIE DVTSLSCLLE  120
KKAKLMEDRL NHLTMIHADA DADADAEANA AAAALVAVNN NNNNNNNHHH QQQQLLLQAP  180
LPAAAAAASS AVMGQQEMVQ TPADWYMNVN PMMMMMTMNN NHPNDMINPP PLLPPAPHRH  240
QVAQENVANV AAPMQHNQYA GHDEDQYVDP FLDSFFSP
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48670.13e-20M-type_MADS family protein