PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dr17301.1

Organism

Dioscorea rotundata

Taxonomic ID

55577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Dioscoreales; Dioscoreaceae; Dioscorea

Family

SBP

Protein Properties

Length: 263aa MW: 30893.3 Da PI: 7.4617

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dr17301.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	130.3	7e-41	87	162	2	77
-SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS SBP 2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 Cq+egC++dls ak+yhrrhkvCe+hska+ v+++gl+qrfCqqCsrfh lsefDe+krsCr+rLa+hn+rrrk+q Dr17301.1 87 CQAEGCHSDLSLAKHYHRRHKVCEFHSKATIVIAAGLQQRFCQQCSRFHVLSEFDETKRSCRKRLADHNRRRRKPQ 162 **************************************************************************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 263 aa Download sequence
MNNLNFNYNY NYNYNYNNHQ YLMPMTNSSY TTNLLAKPEQ DISVSSIGLN LGQRTYFSSD 60 DVSMINKIFS RSRGVYSSLS NQQPPKCQAE GCHSDLSLAK HYHRRHKVCE FHSKATIVIA 120 AGLQQRFCQQ CSRFHVLSEF DETKRSCRKR LADHNRRRRK PQLHKNKQVM IMSTNGNKGN 180 MEGEKKMEVE TFEFEFSNLD QNQNQVHDFI VSDQHDEQQT SPNMSLLLHH DHNLFCSTSS 240 GEQHEQQQQQ HNHEDVMFEV EFM

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	144	161	KRSCRKRLADHNRRRRKP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G02065.1	7e-58	SBP family protein

Link Out ? help Back to Top
Ensembl	Dr17301.1