PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dr17325.1

Organism

Dioscorea rotundata

Taxonomic ID

55577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Dioscoreales; Dioscoreaceae; Dioscorea

Family

DBB

Protein Properties

Length: 243aa MW: 25953.1 Da PI: 4.4766

Description

DBB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dr17325.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	23.1	1.5e-07	15	56	3	38
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg.......Ht 38 r C+++ ++ ++C+ ++ +lC +C H g H+ Dr17325.1 15 GRACDTCRGSPALIYCRADSAFLCGTCDARVH-GanrvasrHE 56 578*************************9999.4356666666 PP
2	zf-B_box	26.9	1e-08	58	103	3	42
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42 ++C+ +e+ ++ C+ + lC+ C +H+ H+++p+ Dr17325.1 58 VWVCEVCEQAPAAVTCKADAAALCAACDADIHSAnplarrHERSPI 103 689*****************************66888889998886 PP

Sequence ? help Back to Top
Protein Sequence Length: 243 aa Download sequence
MASEAEEKSY WGMNGRACDT CRGSPALIYC RADSAFLCGT CDARVHGANR VASRHERVWV 60 CEVCEQAPAA VTCKADAAAL CAACDADIHS ANPLARRHER SPIVPFFDFP ATKTLLFKPS 120 DDDDDAVAVD PTAAAAEEAE AASWILPNPN PNPNHKGMEM LFGDVDPYLD FDYAAPVMDS 180 VVPVQTKVIG GSGGAPPVLA TDGCIELDFT RAKASYSSYN TTHSFSHSVI LSLFLSFSVA 240 LDL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G57660.1	2e-35	CO-like family protein

Link Out ? help Back to Top
Ensembl	Dr17325.1