PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dr17461.1
Organism
Dioscorea rotundata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Dioscoreales; Dioscoreaceae; Dioscorea
Family M-type_MADS
Protein Properties Length: 97aa    MW: 10932.8 Da    PI: 10.9557
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dr17461.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF103.19.6e-33959151
               S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
     SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
               krienk+nrqvtf+kRrng+lKKA+ELSvLCdaeva+iifs++gklye+s+
  Dr17461.1  9 KRIENKINRQVTFAKRRNGLLKKAHELSVLCDAEVALIIFSNRGKLYEFSN 59
               79***********************************************95 PP
Sequence ? help Back to Top
Protein Sequence    Length: 97 aa     Download sequence    
MGRGKVELKR IENKINRQVT FAKRRNGLLK KAHELSVLCD AEVALIIFSN RGKLYEFSNP  60
SSSLKSKVER QKPDMIQQIS GFSISLRVCR AGTCHGN
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G24260.32e-36MIKC_MADS family protein