PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dr17542.1

Organism

Dioscorea rotundata

Taxonomic ID

55577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Dioscoreales; Dioscoreaceae; Dioscorea

Family

bHLH

Protein Properties

Length: 219aa MW: 24556.6 Da PI: 8.4805

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dr17542.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	36.5	8.9e-12	152	197	6	55
HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +++Er RR ri +++ +L+el+P+ +k + +++L +Av++Ik Lq Dr17542.1 152 SIAERERRTRISEKLRKLQELVPNM----DKQTNTSDMLDLAVQHIKTLQ 197 689*******************7....688***************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 219 aa Download sequence
MILMSYSVNR GLGNYSQVGA DDVRSMANRR LQSQLSFSRQ DSLSQISEIS IPDIGDSIGN 60 GKSTEDVAQS YIQNFPIGSW DETNSIVFSA PSKRIKDNNG DAIHSLNNLE SQFSLPKTSL 120 EMASVEKLLQ GQQDFFPFKI RAKRGCATHP RSIAERERRT RISEKLRKLQ ELVPNMDKQT 180 NTSDMLDLAV QHIKTLQGQV QKLTEERANC TCASKQEMA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G05805.1	5e-55	bHLH family protein

Link Out ? help Back to Top
Ensembl	Dr17542.1