PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dr17618.1
Organism
Dioscorea rotundata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Dioscoreales; Dioscoreaceae; Dioscorea
Family bHLH
Protein Properties Length: 303aa    MW: 33604.3 Da    PI: 9.0809
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dr17618.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH47.82.6e-15150196455
                HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
        HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                 hn+ Er+RRd iN+++  L++l+P++     kK +Ka+iL ++++Y+k+Lq
  Dr17618.1 150 IHNQSERKRRDMINEKMRALQKLVPNS-----KKTDKASILDEVINYLKQLQ 196
                5*************************9.....9******************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 303 aa     Download sequence    
MPGFSERDVR MNQEVKELTW RNGKPQLGTL ESIIEQATAG LAGAVAQQPS FVSWLTGEDX  60
GEMNLGSREG SCSGDGERDK KKACRWSSPE NTWEVCGGLS SSLSPENISS GDGCDSFCRS  120
KSSSQGVEEI EKKKMKKNKK VMRRSKAATI HNQSERKRRD MINEKMRALQ KLVPNSKKTD  180
KASILDEVIN YLKQLQNQVK MMTCISHMMM MMPNLQMSMM AQVAQMTQMG LGLGFMDLGS  240
FVRPGTVPMS LPPLHHPLSF PPFTVAGEQM LQASSCSLSS NFFFGFYAAK NEHGSIQKDG  300
YNV
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1155160ERKRRD
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00050.13e-28bHLH family protein