PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dr17660.1

Organism

Dioscorea rotundata

Taxonomic ID

55577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Dioscoreales; Dioscoreaceae; Dioscorea

Family

MYB

Protein Properties

Length: 412aa MW: 45246 Da PI: 7.0974

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dr17660.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	54.4	2.8e-17	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g W++eEde+l + ++++G g+W+++++ g+ R++k+c++rw +yl Dr17660.1 14 KGLWSPEEDEKLMKHITKYGHGCWSSVPKLAGLQRCGKSCRLRWINYL 61 678*******************************************97 PP
2	Myb_DNA-binding	43.1	1e-13	67	110	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg ++ +E+ l++++++ lG++ W+ Ia+ ++ gRt++++k+ w++ Dr17660.1 67 RGTFSDQEENLIIELHAVLGNR-WSQIAAQLP-GRTDNEIKNLWNS 110 899*****************.*****.*******9986 PP

Sequence ? help Back to Top
Protein Sequence Length: 412 aa Download sequence
MGRHSCCYKQ KLRKGLWSPE EDEKLMKHIT KYGHGCWSSV PKLAGLQRCG KSCRLRWINY 60 LRPDLKRGTF SDQEENLIIE LHAVLGNRWS QIAAQLPGRT DNEIKNLWNS CIKKKLRQRG 120 IDPVTHKPLS ETETQTDARE DGCKATAEGD AEKISKPQVS SEVKXHSLTT SNPIPAVLLP 180 LGTESSSCCR DSCMDHHQFL VRHESSSSCS QNQTQTSNPM DCLSFPPGLN YSTNSLFWFN 240 QNSRQFNINP DLNCSNSNMY SVMPPITCAG PMFSTPVDLK SIALAPACTN AHGTGNQYWE 300 VCHDSSNSSA SSGIGGGGSG SGGIDGLQSN NSSLVDSGIF SWSDGESEEL KWSEYLQGSF 360 PVSAALINNS NNNYNQSQQL FSGGQQQVKA EGYFGNDGGL GPWHPGYYGK HL

Sequence ? help Back to Top

Protein Sequence Length: 412 aa Download sequence

MGRHSCCYKQ KLRKGLWSPE EDEKLMKHIT KYGHGCWSSV PKLAGLQRCG KSCRLRWINY  60
LRPDLKRGTF SDQEENLIIE LHAVLGNRWS QIAAQLPGRT DNEIKNLWNS CIKKKLRQRG  120
IDPVTHKPLS ETETQTDARE DGCKATAEGD AEKISKPQVS SEVKXHSLTT SNPIPAVLLP  180
LGTESSSCCR DSCMDHHQFL VRHESSSSCS QNQTQTSNPM DCLSFPPGLN YSTNSLFWFN  240
QNSRQFNINP DLNCSNSNMY SVMPPITCAG PMFSTPVDLK SIALAPACTN AHGTGNQYWE  300
VCHDSSNSSA SSGIGGGGSG SGGIDGLQSN NSSLVDSGIF SWSDGESEEL KWSEYLQGSF  360
PVSAALINNS NNNYNQSQQL FSGGQQQVKA EGYFGNDGGL GPWHPGYYGK HL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G01680.3	1e-88	MYB family protein

Link Out ? help Back to Top
Ensembl	Dr17660.1