PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dr18110.1
Organism
Dioscorea rotundata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Dioscoreales; Dioscoreaceae; Dioscorea
Family MIKC_MADS
Protein Properties Length: 208aa    MW: 24001.9 Da    PI: 7.554
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dr18110.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF81.36.2e-261058250
               ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
     SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
               rien   rqvtf+kRr+g+lKKA ELSvLCdae+ +iifs++gklye +
  Dr18110.1 10 RIENPVHRQVTFCKRRAGLLKKARELSVLCDAEIGIIIFSTHGKLYELA 58
               8*********************************************965 PP
2K-box57.84.7e-2077173499
      K-box   4 ssgksleeakaeslqqelakLkkeienLqreqRhllGe.dLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 
                ++ + +e++++++  qe++k+k+ei+ Lq+ ++ + Ge  ++ ++l eLq+Le+ Le  +++ R+ K+++++++i+ l++ke  l+ +n+ L++k+ 
  Dr18110.1  77 TQAEGAETNQTQETVQEISKMKQEIDLLQKGLKYMFGErTMGHMTLDELQSLEKYLEIWMNHTRAAKMQIMFMEIQALKNKEGILKAANELLQEKIL 173
                4556689999***************************9459*****************************************************985 PP
Sequence ? help Back to Top
Protein Sequence    Length: 208 aa     Download sequence    
MARGKVQMRR IENPVHRQVT FCKRRAGLLK KARELSVLCD AEIGIIIFST HGKLYELATK  60
GNMQSLIERY KNSCAETQAE GAETNQTQET VQEISKMKQE IDLLQKGLKY MFGERTMGHM  120
TLDELQSLEK YLEIWMNHTR AAKMQIMFME IQALKNKEGI LKAANELLQE KILEQNGVYD  180
VSPMIADIQY PLTIHSDSLT IQNELFQF
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G71692.17e-67MIKC_MADS family protein