PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dr18114.1

Organism

Dioscorea rotundata

Taxonomic ID

55577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Dioscoreales; Dioscoreaceae; Dioscorea

Family

MIKC_MADS

Protein Properties

Length: 233aa MW: 26945.5 Da PI: 9.3706

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dr18114.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	100	9.3e-32	9	59	1	51
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krien++nrqvtf+kRrng+lKKA+ELSvLCdaeva+i+fss+g+lyeys+ Dr18114.1 9 KRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYSN 59 79***********************************************95 PP
2	K-box	109.5	3.6e-36	83	174	9	100
K-box 9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100 e + ++++qqe+akL+ +i+ Lq+ +Rhl+Ge L+sLs+keL+qLe++Le+++ +iRskK+ell+++ie++qk+e elq++n++Lr+k+ e Dr18114.1 83 IEVNSQQYYQQEAAKLRHQINILQNANRHLVGEALGSLSVKELKQLENRLERGIARIRSKKHELLFAEIEYMQKREVELQNDNMYLRAKISE 174 677889***********************************************************************************976 PP

Sequence ? help Back to Top
Protein Sequence Length: 233 aa Download sequence
MGRGKIEIKR IENTTNRQVT FCKRRNGLLK KAYELSVLCD AEVALIVFSS RGRLYEYSNN 60 NIKSTIEKYK KACAANSNSA AIIEVNSQQY YQQEAAKLRH QINILQNANR HLVGEALGSL 120 SVKELKQLEN RLERGIARIR SKKHELLFAE IEYMQKREVE LQNDNMYLRA KISENERVQQ 180 ARIVQAGAEF DTFPTFDSRN YYHINMLEPT PHYSNQDQTA LHLGYEAKDD QAA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G42830.1	1e-100	MIKC_MADS family protein

Link Out ? help Back to Top
Ensembl	Dr18114.1