PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dr18157.1

Organism

Dioscorea rotundata

Taxonomic ID

55577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Dioscoreales; Dioscoreaceae; Dioscorea

Family

MYB

Protein Properties

Length: 298aa MW: 33010.8 Da PI: 9.2207

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dr18157.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	34.3	5.4e-11	31	77	3	47
SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqky 47 WT++E +l+ da ++ ++ +W+ +a++++ g+t +++s++q++ Dr18157.1 31 IWTPDENKLFEDALAKVDSNipdRWEQVAAEIP-GKTVDDIISHYQDL 77 6******************************.**********86 PP
2	Myb_DNA-binding	46.8	6.9e-15	138	182	3	47
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT+eE+ +++ + k++G+g+W+ I+r + + Rt+ q+ s+ qky Dr18157.1 138 PWTEEEHRRFLMGLKKYGKGDWRNISRNFVTSRTPTQVASHAQKY 182 8*******************************************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 298 aa Download sequence
MMTRRGVEVL PPSSACFGNS NWLLSQSRSG IWTPDENKLF EDALAKVDSN IPDRWEQVAA 60 EIPGKTVDDI ISHYQDLEHD VRYIEAGMIP APGYGSSSFT LDWDTSFGFD GFKHTYGVGA 120 KRSGAARLSD QERKKGVPWT EEEHRRFLMG LKKYGKGDWR NISRNFVTSR TPTQVASHAQ 180 KYFIRLSSGG KDKRRSSIHD ITTVNLPDEA PASPSHASNS AIAPGTPDKY SVMAGSTKST 240 VGQSPSQMHG NPFSQLPYGL AHSELKQVQN STKNNFNSMI ANHSNMFQML STHLHPHG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G38090.1	4e-95	MYB family protein

Link Out ? help Back to Top
Ensembl	Dr18157.1