PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dr18203.1

Organism

Dioscorea rotundata

Taxonomic ID

55577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Dioscoreales; Dioscoreaceae; Dioscorea

Family

MYB

Protein Properties

Length: 264aa MW: 30201.1 Da PI: 5.9984

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dr18203.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	45.6	1.6e-14	68	111	4	48
S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 W++ Ede l + v+++G ++W++I+ ++ gR++k+c+ rw+++l Dr18203.1 68 WSKIEDETLRKMVEEHGLHNWTLISGSIP-GRSRKSCRVRWNNHL 111 ***************************.***********97 PP
2	Myb_DNA-binding	49.5	9.5e-16	118	160	2	46
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +++T +Ede++v+a+ +lG++ W+ Iar++ gRt++ +k++w++ Dr18203.1 118 KPFTLQEDEIIVKAHGELGNK-WADIARMLL-GRTDNAVKNHWHS 160 689****************.****9.*********86 PP

Sequence ? help Back to Top
Protein Sequence Length: 264 aa Download sequence
MGCLTRLDSS VGPLSLFRGE AISPGSGTRM GMGWGGNEEY LXTHFPILGG DFPSPPQLIE 60 PNMKKVLWSK IEDETLRKMV EEHGLHNWTL ISGSIPGRSR KSCRVRWNNH LSXBIEHKPF 120 TLQEDEIIVK AHGELGNKWA DIARMLLGRT DNAVKNHWHS KLKRHKFSRI HQCDDDDDDD 180 DNKSRRDLPE VILPLKIVIP ANLNYEEQQR ILMMMNSWYE EPRTLPLIDR LGVTNSDDEP 240 PSSIMSTMXF EDPCTELTLR PPGQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G50060.1	5e-42	MYB family protein

Link Out ? help Back to Top
Ensembl	Dr18203.1