PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dr18259.1

Organism

Dioscorea rotundata

Taxonomic ID

55577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Dioscoreales; Dioscoreaceae; Dioscorea

Family

ARR-B

Protein Properties

Length: 656aa MW: 72300.9 Da PI: 4.6507

Description

ARR-B family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dr18259.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	85.7	4.8e-27	206	259	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kpr++W++eLH++Fv+av++L G++kA+Pk+ile+m+v+g+t+e+v+SHLQk+Rl Dr18259.1 206 KPRVVWSSELHQAFVSAVTRL-GIDKAVPKKILEMMDVPGITRENVASHLQKFRL 259 79*****************.******************************7 PP
2	Myb_DNA-binding	35.3	2.6e-11	208	258	1	48
TSSS-HHHHHHHHHHHHHTTTT..-HHHHHHHHT.TTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg..tWktIartmg.kgRtlkqcksrwqkyl 48 r W+ e+++ +v av++lG + +k+I ++m g t++++ s++qk++ Dr18259.1 208 RVVWSSELHQAFVSAVTRLGIDkaVPKKILEMMDvPGITRENVASHLQKFR 258 678**********************************************97 PP
3	Response_reg	76.5	9.8e-26	28	133	1	106
EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTTES CS Response_reg 1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaGak 95 vl+vdD+pl ++ ++++l + +y +v+++ ++ al +++e++ +Dlil D+ mp+mdG++ll+ i e +lp+i+++a + ++ + + + Ga Dr18259.1 28 VLVVDDDPLCLRTIERLLWNCHY-DVTTCPRADTALSMVRERKggFDLILSDVHMPDMDGFKLLELIGLET-DLPVIMISADDGKDVVMKGVTNGAV 122 89*******************.***********999999******************7766.8******************** PP EEEESS--HHH CS Response_reg 96 dflsKpfdpee 106 d+++Kp+ +e+ Dr18259.1 123 DYIVKPVRIEA 133 ****99986 PP

Sequence ? help Back to Top
Protein Sequence Length: 656 aa Download sequence
MEISRRVSAG PSLVTVKLPM DFPAGLRVLV VDDDPLCLRT IERLLWNCHY DVTTCPRADT 60 ALSMVRERKG GFDLILSDVH MPDMDGFKLL ELIGLETDLP VIMISADDGK DVVMKGVTNG 120 AVDYIVKPVR IEAVKIMWQH VVRKYQMKKK VLEPVECAEE KKADENGDNA SLAEDDESWK 180 NGNRKKDEND GEDEDEQGEE SPPLKKPRVV WSSELHQAFV SAVTRLGIDK AVPKKILEMM 240 DVPGITRENV ASHLQKFRLF VKKNNILGDQ KQLSDGTRAG YAPINSVSSF DLQGPHIPGQ 300 HMLQNQMNLR SGPRQLAXTG STLSLLDRMN RFNSNAQTSN TSRIVPWEQS FNNRQMNSIL 360 RSQTNMESRQ SQQVLQSDSN LGLQATQGTP SFLDPFPTST NLAFNLTTSS ACPVNSIQQS 420 RQFDQFRQQN NFTADVSTRG QLMNGISGEL DDVLLSNLCQ QITTPNSHVG GTSAAETLLP 480 SSYGSASQTL YPCVGDNYTN ALAGNSFPLV TSTATRDILP LGMFGETVPP RSDIELLDHM 540 IGSKPEDNFA PNHWNSNRNT GIESNVVMPN GTETTDCNKI TGAVQCSNSI TAESSAAVTT 600 NDVPESSINV FPNELKNVVS DQFLQQEGIG VIDTEFNYEA FSMDDILNYT PGPLPM

Sequence ? help Back to Top

Protein Sequence Length: 656 aa Download sequence

MEISRRVSAG PSLVTVKLPM DFPAGLRVLV VDDDPLCLRT IERLLWNCHY DVTTCPRADT  60
ALSMVRERKG GFDLILSDVH MPDMDGFKLL ELIGLETDLP VIMISADDGK DVVMKGVTNG  120
AVDYIVKPVR IEAVKIMWQH VVRKYQMKKK VLEPVECAEE KKADENGDNA SLAEDDESWK  180
NGNRKKDEND GEDEDEQGEE SPPLKKPRVV WSSELHQAFV SAVTRLGIDK AVPKKILEMM  240
DVPGITRENV ASHLQKFRLF VKKNNILGDQ KQLSDGTRAG YAPINSVSSF DLQGPHIPGQ  300
HMLQNQMNLR SGPRQLAXTG STLSLLDRMN RFNSNAQTSN TSRIVPWEQS FNNRQMNSIL  360
RSQTNMESRQ SQQVLQSDSN LGLQATQGTP SFLDPFPTST NLAFNLTTSS ACPVNSIQQS  420
RQFDQFRQQN NFTADVSTRG QLMNGISGEL DDVLLSNLCQ QITTPNSHVG GTSAAETLLP  480
SSYGSASQTL YPCVGDNYTN ALAGNSFPLV TSTATRDILP LGMFGETVPP RSDIELLDHM  540
IGSKPEDNFA PNHWNSNRNT GIESNVVMPN GTETTDCNKI TGAVQCSNSI TAESSAAVTT  600
NDVPESSINV FPNELKNVVS DQFLQQEGIG VIDTEFNYEA FSMDDILNYT PGPLPM

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G16110.1	7e-96	ARR-B family protein

Link Out ? help Back to Top
Ensembl	Dr18259.1