PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dr18937.1

Organism

Dioscorea rotundata

Taxonomic ID

55577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Dioscoreales; Dioscoreaceae; Dioscorea

Family

GRF

Protein Properties

Length: 352aa MW: 40258.4 Da PI: 8.5944

Description

GRF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dr18937.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRC	78.3	7.5e-25	82	125	1	44
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkske 44 d+epgrCrRtDGKkWRCs+++++++k+CErH+hrg++rsrk++e Dr18937.1 82 DPEPGRCRRTDGKKWRCSKDAYPDSKYCERHMHRGKNRSRKPVE 125 79***************************************998 PP
2	QLQ	61.7	2e-21	10	45	2	37
QLQ 2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 +FTa+Q+q+L++Q+l++Ky+a++ P+P++Ll++i++ Dr18937.1 10 PFTATQWQELEHQALIFKYMASGIPIPSDLLLPIRR 45 9*********************************86 PP

Sequence ? help Back to Top
Protein Sequence Length: 352 aa Download sequence
MMSGRGTRYP FTATQWQELE HQALIFKYMA SGIPIPSDLL LPIRRSFLLD SSPSTNPSLA 60 FPHPLPMGWG SYHLGYGKKA EDPEPGRCRR TDGKKWRCSK DAYPDSKYCE RHMHRGKNRS 120 RKPVEMSLAS HPSTHHSLYH SPPPPLSIST PELFYTGYSS SAKPPNTTHL HLDTGSYYTT 180 DNKDYYRYAH GMRDVDEYSF FSEASGAARE TSSWPKLSTA TQQHGYADYS TCTEDLLSKE 240 ESGKQHCFVL GADFKLEKPV KEDREKVPLR HFFDEWPQKS KETSPWMDLE EHSSSKTQLS 300 ISIPAMTSRY HIGYYFPVFN LKHEQKILKS MAFVSASLSC EKADIKLRIT TC

Sequence ? help Back to Top

Protein Sequence Length: 352 aa Download sequence

MMSGRGTRYP FTATQWQELE HQALIFKYMA SGIPIPSDLL LPIRRSFLLD SSPSTNPSLA  60
FPHPLPMGWG SYHLGYGKKA EDPEPGRCRR TDGKKWRCSK DAYPDSKYCE RHMHRGKNRS  120
RKPVEMSLAS HPSTHHSLYH SPPPPLSIST PELFYTGYSS SAKPPNTTHL HLDTGSYYTT  180
DNKDYYRYAH GMRDVDEYSF FSEASGAARE TSSWPKLSTA TQQHGYADYS TCTEDLLSKE  240
ESGKQHCFVL GADFKLEKPV KEDREKVPLR HFFDEWPQKS KETSPWMDLE EHSSSKTQLS  300
ISIPAMTSRY HIGYYFPVFN LKHEQKILKS MAFVSASLSC EKADIKLRIT TC

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G13960.1	8e-48	GRF family protein

Link Out ? help Back to Top
Ensembl	Dr18937.1