PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dr18954.1

Organism

Dioscorea rotundata

Taxonomic ID

55577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Dioscoreales; Dioscoreaceae; Dioscorea

Family

C2H2

Protein Properties

Length: 255aa MW: 27917.7 Da PI: 8.2577

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dr18954.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	15.5	4.8e-05	89	111	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C +C++ F+++ L H++ H Dr18954.1 89 FSCRYCSRNFPTSQALGGHQNAH 111 89******************988 PP

Sequence ? help Back to Top
Protein Sequence Length: 255 aa Download sequence
MSNIEAQDMM TVMTVESFSQ LPFLRPAPPR EKQNSXISKP PLRLFGFEVP QEPNTHQSYD 60 HASHNTICKK FNIQSESAGT TAGDSGKRFS CRYCSRNFPT SQALGGHQNA HKRERQHAKR 120 LQLQSMSSNL HHGPPSIVEG QVISFHSLSS FPSFSHNQYP INGGLRTVLQ PINGNPVPCL 180 WRAYGDGGVG ISNPLFGGGE DCYNVGGFSD TLINGSSSST TTTSSSSSSS SRRYHDHVHE 240 SSLLPKDNVS LDLHL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G41940.1	6e-25	C2H2 family protein

Link Out ? help Back to Top
Ensembl	Dr18954.1