PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dr19164.1

Organism

Dioscorea rotundata

Taxonomic ID

55577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Dioscoreales; Dioscoreaceae; Dioscorea

Family

bHLH

Protein Properties

Length: 330aa MW: 36544.6 Da PI: 6.8364

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dr19164.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	43.2	6.9e-14	110	161	1	55
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +r++h ++Er+RR+++N+ ++ Lr+l+P++ + ++ + a+i+ A++++k+L+ Dr19164.1 110 QRMTHIAVERNRRRQMNEHLSVLRSLMPES---YVQRGDQASIVGGAIDFVKELE 161 79**************************...9****************995 PP

Sequence ? help Back to Top
Protein Sequence Length: 330 aa Download sequence
MSLEALSSNE FFNLLINDDS VSAPLATTSL LFNSTGLSLL GNFNGDTGSG SSGGGNGGGG 60 GGGASFSSMM MMHGEFSTPV NGGDVKPGQS RRKRRRRTRS CKNKEEAENQ RMTHIAVERN 120 RRRQMNEHLS VLRSLMPESY VQRGDQASIV GGAIDFVKEL EQLLQSLEAQ KRTLIQQQQQ 180 XXHHHHHHNQ KVVGDHDTED VPPFSQFFAY PQYIWCHSDR ECQPESHRAP AMADIEVTLI 240 ETHANLRILS PRRPRQLLKL VVGLQALSLT ILHLNVTTLD SLVLYSLSTK VEEGCNLTTV 300 DEIAAVVHHM LTLIEAETQS NRPAQESPVL

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	91	97	RRKRRRR
2	92	96	RKRRR
3	92	98	RKRRRRT
4	92	99	RKRRRRTR
5	111	122	RMTHIAVERNRR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G72210.1	1e-68	bHLH family protein

Link Out ? help Back to Top
Ensembl	Dr19164.1