PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dr19173.1

Organism

Dioscorea rotundata

Taxonomic ID

55577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Dioscoreales; Dioscoreaceae; Dioscorea

Family

bHLH

Protein Properties

Length: 598aa MW: 65536 Da PI: 5.1621

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dr19173.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	38.8	1.7e-12	421	466	4	54
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 +h e+Er+RR+++N++f Lr ++P+ K++Ka+ L A+ YI++L Dr19173.1 421 NHVEAERQRREKLNQRFYALRAVVPNV-----SKMDKASLLGDAITYINEL 466 799*********************6.....5*************998 PP

Sequence ? help Back to Top
Protein Sequence Length: 598 aa Download sequence
MYFNQETLQQ RFQALIEGAK EKWTYAIFWQ SSVDEASGAS LLGWGDGYYK GCEEDRQKRT 60 LGNAASAAEQ EHRKRVLREL NSLVAGGGSS SPDEVVEEEV TDTEWFFLVS MTQSFVNGAG 120 IPGQALFSGS PIWIAGGDRL QVSACERARQ AEVFGLRTMV CVPVGGGVVE LGSTDLIFQS 180 NEIMNKIRFL FSFNATEMEM NPSASFFQPP QPAAQQPEVV DQGETDPAAL WISDPSLVEI 240 KDSVSPEISV SKPHVPFDSN PSSSTLTENP SSINLQNQYH PSSSHFTKEL NFSEFHVNTT 300 AAPPQSCKPE SGSILNFSEG RKTPAPLQHQ ITDQNKNKRS TGATSRASNE DGMLSFTSTP 360 ARPSSAPGNA GGIILNGGDS EHSDXEASLR EAESSRVVAE PEKKPRKRGR KPANGREEPL 420 NHVEAERQRR EKLNQRFYAL RAVVPNVSKM DKASLLGDAI TYINELRSKM QTLESDKEIL 480 QSQLEDLKQD QDGDSKPMNG SAAAAAKCIG VEIEVKILGP EAMIRVQCIK KNHPAARLMT 540 AMRELDLDLH YASVTVMNDM MIQQATVKML SRSYTQEQLT AALYSKVAES SSSNGNAR

Sequence ? help Back to Top

Protein Sequence Length: 598 aa Download sequence

MYFNQETLQQ RFQALIEGAK EKWTYAIFWQ SSVDEASGAS LLGWGDGYYK GCEEDRQKRT  60
LGNAASAAEQ EHRKRVLREL NSLVAGGGSS SPDEVVEEEV TDTEWFFLVS MTQSFVNGAG  120
IPGQALFSGS PIWIAGGDRL QVSACERARQ AEVFGLRTMV CVPVGGGVVE LGSTDLIFQS  180
NEIMNKIRFL FSFNATEMEM NPSASFFQPP QPAAQQPEVV DQGETDPAAL WISDPSLVEI  240
KDSVSPEISV SKPHVPFDSN PSSSTLTENP SSINLQNQYH PSSSHFTKEL NFSEFHVNTT  300
AAPPQSCKPE SGSILNFSEG RKTPAPLQHQ ITDQNKNKRS TGATSRASNE DGMLSFTSTP  360
ARPSSAPGNA GGIILNGGDS EHSDXEASLR EAESSRVVAE PEKKPRKRGR KPANGREEPL  420
NHVEAERQRR EKLNQRFYAL RAVVPNVSKM DKASLLGDAI TYINELRSKM QTLESDKEIL  480
QSQLEDLKQD QDGDSKPMNG SAAAAAKCIG VEIEVKILGP EAMIRVQCIK KNHPAARLMT  540
AMRELDLDLH YASVTVMNDM MIQQATVKML SRSYTQEQLT AALYSKVAES SSSNGNAR

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	403	411	KKPRKRGRK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G32640.1	1e-161	bHLH family protein

Link Out ? help Back to Top
Ensembl	Dr19173.1