PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dr19441.1
Organism
Dioscorea rotundata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Dioscoreales; Dioscoreaceae; Dioscorea
Family MYB
Protein Properties Length: 310aa    MW: 34422.7 Da    PI: 9.8508
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dr19441.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding21.55.6e-073176447
                     S-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  4 WTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqky 47
                     WT+ E +++ +a +   ++   +Wk +a++++ g++  +++ +++++
        Dr19441.1 31 WTASENKIFENALAYIDSDtpnRWKMVAEMLP-GKSVDDVITHYRDL 76
                     *****************9999***********.***********986 PP
2Myb_DNA-binding45.71.5e-14138182347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT++E+ +++ + k++G+g+W+ I+r +  +Rt+ q+ s+ qky
        Dr19441.1 138 PWTEDEHRKFLMGLKKYGKGDWRNISRNFVPTRTPTQVASHAQKY 182
                      8*****************************9*************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 310 aa     Download sequence    
MTKWGVEVLP PASSYFGNSN WFLGQNRSVI WTASENKIFE NALAYIDSDT PNRWKMVAEM  60
LPGKSVDDVI THYRDLEHDV SHIEAGLIPV PGYSSPSFTL DWESSNLGFE GLRQAYGAVA  120
GKRAAGRLSE QERKKGVPWT EDEHRKFLMG LKKYGKGDWR NISRNFVPTR TPTQVASHAQ  180
KYFIRLSSGG KDKRRSSIHD ITTVNLPDDN PVSPTHASSL STQSSSVVLP GTPDKFSVKL  240
EPNNCTEAAR TMSGTSIQMH TNRLVQPSYG VTPYQLKLQA QSPNKSSFGS IMGVNHSMFR  300
TLSAQLHPHG
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38090.11e-100MYB family protein