PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dr19502.1

Organism

Dioscorea rotundata

Taxonomic ID

55577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Dioscoreales; Dioscoreaceae; Dioscorea

Family

MYB

Protein Properties

Length: 368aa MW: 41758.2 Da PI: 6.5758

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dr19502.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	60.4	3.9e-19	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd++l+d+++++G g+W+t ++ g+ R++k+c++rw +yl Dr19502.1 14 KGPWTPEEDQKLIDYIQKHGHGSWRTLPKNAGLARCGKSCRLRWTNYL 61 79********************************************97 PP
2	Myb_DNA-binding	54.4	2.8e-17	67	111	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rgr++ eE+e +++++ lG++ W++Ia++++ gRt++++k++w+++ Dr19502.1 67 RGRFSFEEEETIIQLHSILGNK-WSAIAARLP-GRTDNEIKNYWNTH 111 89******************.*****.**********97 PP

Sequence ? help Back to Top
Protein Sequence Length: 368 aa Download sequence
MGRAPCCDKN GLKKGPWTPE EDQKLIDYIQ KHGHGSWRTL PKNAGLARCG KSCRLRWTNY 60 LRPDIKRGRF SFEEEETIIQ LHSILGNKWS AIAARLPGRT DNEIKNYWNT HIRKRLLRMG 120 IDPVTHSPRL DLLDFSSFLA PSLYNQTQLD VSRLLGIEPL VNTELLRIAT NLLTSQCQNS 180 NMVNQRLQHQ SLISNPPQVQ DHTLTAFQPX QQQQQQQLQN SIPDISATIC TTSNAPFFGD 240 QQSQLVQANA GHFQADVQTN TWQTSSHAQC DIQDNYGPLP TFNSQYPQQL ISQHLSTDDY 300 NQAFQIQNNN HGFDFSPVLS TTTSSPTQLN SSPSTYINSC STEDDRDSYS SNLFNFQIPD 360 LLDVSEFL

Sequence ? help Back to Top

Protein Sequence Length: 368 aa Download sequence

MGRAPCCDKN GLKKGPWTPE EDQKLIDYIQ KHGHGSWRTL PKNAGLARCG KSCRLRWTNY  60
LRPDIKRGRF SFEEEETIIQ LHSILGNKWS AIAARLPGRT DNEIKNYWNT HIRKRLLRMG  120
IDPVTHSPRL DLLDFSSFLA PSLYNQTQLD VSRLLGIEPL VNTELLRIAT NLLTSQCQNS  180
NMVNQRLQHQ SLISNPPQVQ DHTLTAFQPX QQQQQQQLQN SIPDISATIC TTSNAPFFGD  240
QQSQLVQANA GHFQADVQTN TWQTSSHAQC DIQDNYGPLP TFNSQYPQQL ISQHLSTDDY  300
NQAFQIQNNN HGFDFSPVLS TTTSSPTQLN SSPSTYINSC STEDDRDSYS SNLFNFQIPD  360
LLDVSEFL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G21440.1	1e-110	MYB family protein

Link Out ? help Back to Top
Ensembl	Dr19502.1