PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dr19953.1

Organism

Dioscorea rotundata

Taxonomic ID

55577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Dioscoreales; Dioscoreaceae; Dioscorea

Family

C2H2

Protein Properties

Length: 322aa MW: 36452.2 Da PI: 8.1939

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dr19953.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	22	4.3e-07	161	183	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C+ Cgk F+r nL+ H+r H Dr19953.1 161 HYCQVCGKGFRRDANLRMHMRAH 183 68*******************99 PP
2	zf-C2H2	10.7	0.0017	257	280	1	23
EEETTTT.EEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCg.ksFsrksnLkrHirtH 23 y+C+ C+ k+Fs s+L++H + + Dr19953.1 257 YVCKRCNlKHFSVLSDLRTHEKHC 280 9*******************9876 PP

Sequence ? help Back to Top
Protein Sequence Length: 322 aa Download sequence
MMMNTGFQTY EGMEDHDLVS TQGHEEPQTT LLYNLSVLKE KVRQLQSLVT LIITPNHAEQ 60 ESDTSEAISS ADLLVRDLVF TASSTINALH QLHDLNLISK VSYDELSQVH TDPFHATNAT 120 TPHHFYSAIK NTDPMPHDNS SSMESAIIEL EAGDLLAKYT HYCQVCGKGF RRDANLRMHM 180 RAHGDAYKSN AALSNPMKNI NACSDQGYNT TNNNVIRKYS CPQEGCRWNK NHAKFQPLKS 240 MICAKNHYKR SHCPKMYVCK RCNLKHFSVL SDLRTHEKHC GDLRWRCSCG TTFSRKDKLF 300 GHVALFVGHS PVINHNITGK TN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G22890.1	3e-97	C2H2 family protein

Link Out ? help Back to Top
Ensembl	Dr19953.1