PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dr20063.1
Organism
Dioscorea rotundata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Dioscoreales; Dioscoreaceae; Dioscorea
Family C2H2
Protein Properties Length: 486aa    MW: 53760.1 Da    PI: 6.7769
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dr20063.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H219.92e-06249270223
                EETTTTEEESSHHHHHHHHHHT CS
    zf-C2H2   2 kCpdCgksFsrksnLkrHirtH 23 
                 C +Cgk F+r  nL+ H+r H
  Dr20063.1 249 FCLICGKGFKRDANLRMHMRGH 270
                5*******************98 PP
Sequence ? help Back to Top
Protein Sequence    Length: 486 aa     Download sequence    
MDLKKRGLSE SSPLKASSXS LMTPPESSSP SNLNLNPNPN ISFTTTQFGP SNLCFETRTN  60
QSFHAYQPNL GIQSLQSYHD IKKKDQQQVL DWDPRVMLNN LSFLEQKIHQ VQEVVRSMIG  120
REGSQFAAQQ QLVTADLTSI IIQLISTAGT LLPSFKNSSL PNNNGSLIGS DIPSSDSTKA  180
SEYEELIKGF SNARDEGDDL MKYVNGCGGE GADSVLAEDD AVDGDNLPPG SYEVLQLEKE  240
EILAPHTHFC LICGKGFKRD ANLRMHMRGH GDEYKTPAAL AKPSKEISSE PVPIKRYSCP  300
FIGCKRNKEH KKFQPLKTIL CVKNHYKRSH CDKSYTCSRC NRKKFSVIAD LKTHEKHCGR  360
DKWLCSCGTT FSRKDKLFGH VALFQGHTPA LPPVDDAKVS VVLDQVHNND LMNGGSIGFN  420
FGSASDDVGL LDIKGDDDDR GFFSPMNFDS CNFGSLDDFS RPPFEVSESS FSILPGSYNY  480
VNRNGS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G34370.21e-158C2H2 family protein