PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dr20409.1

Organism

Dioscorea rotundata

Taxonomic ID

55577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Dioscoreales; Dioscoreaceae; Dioscorea

Family

Whirly

Protein Properties

Length: 154aa MW: 17135.4 Da PI: 10.0027

Description

Whirly family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dr20409.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Whirly	124.8	5e-39	68	152	1	85
Whirly 1 svyktkaalkvkavrptfealdsgnlklkraGglllelanataerkydWekkqsfalsatevaelvdlaskesceffhdpaakgs 85 s+yk+kaal+++++ p+f+ ldsg++k++++G+ l+++a+a+++r+ydW++kq+f+ls+te+++l++l++k+sceffhdp+++ s Dr20409.1 68 SIYKGKAALTIEPRPPEFSPLDSGAFKVSKEGFALMQFAPAVGTRQYDWSRKQVFSLSVTEIGTLMSLGAKDSCEFFHDPFKGRS 152 7********************************************************************************9875 PP

Sequence ? help Back to Top
Protein Sequence Length: 154 aa Download sequence
MALPISHSLP SLTHGFVPKT LXLKRTPSFI VSRRSDYYEP QKVTSRPPPP EDSLSAASQP 60 SRVYVGYSIY KGKAALTIEP RPPEFSPLDS GAFKVSKEGF ALMQFAPAVG TRQYDWSRKQ 120 VFSLSVTEIG TLMSLGAKDS CEFFHDPFKG RSLW

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G14410.1	1e-55	Whirly family protein

Link Out ? help Back to Top
Ensembl	Dr20409.1