PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dr20419.1

Organism

Dioscorea rotundata

Taxonomic ID

55577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Dioscoreales; Dioscoreaceae; Dioscorea

Family

HD-ZIP

Protein Properties

Length: 305aa MW: 35065.7 Da PI: 4.8045

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dr20419.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	60	3.7e-19	86	139	3	56
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k++++t++q++ Le+ Fe ++++ e++ +LA+ lgL+ rqV +WFqNrRa++k Dr20419.1 86 KKRRLTTDQVRFLEKSFELENKLEPERKIQLARDLGLQPRQVAIWFQNRRARWK 139 56789************************************************9 PP
2	HD-ZIP_I/II	129.4	1.5e-41	85	176	1	92
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 ekkrrl+++qv++LE+sFe e+kLeperK +lar+Lglqprqva+WFqnrRAR+ktkqlEkdyeaLk +++ lk+++++L ke+++L++e+ Dr20419.1 85 EKKRRLTTDQVRFLEKSFELENKLEPERKIQLARDLGLQPRQVAIWFQNRRARWKTKQLEKDYEALKINFNVLKTDHDNLLKEKDKLKAEIV 176 69**************************************************************************************9986 PP

Sequence ? help Back to Top
Protein Sequence Length: 305 aa Download sequence
MAGRRVYGGS NMAALLQSEG IPAETIEALL SPGSNPGGFL VSRNLVNFED VCGNTSERPS 60 FYRPFDLEEN VVVDEELDES LHQPEKKRRL TTDQVRFLEK SFELENKLEP ERKIQLARDL 120 GLQPRQVAIW FQNRRARWKT KQLEKDYEAL KINFNVLKTD HDNLLKEKDK LKAEIVSLTE 180 KLMHKEKDKD DKGNKHALEF KNSINNEAVV ETKRLDVQXS TLVCKQEDLS STNSAVFDSD 240 SSHYTDEVGH TVSSNAFEPD HSDLSHAEED GEVKKYPFLK FEDNNSTDYG VPVVVEDQSF 300 WFWNY

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	134	142	RRARWKTKQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G01470.1	1e-47	HD-ZIP family protein

Link Out ? help Back to Top
Ensembl	Dr20419.1