PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dr20585.1
Organism
Dioscorea rotundata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Dioscoreales; Dioscoreaceae; Dioscorea
Family HD-ZIP
Protein Properties Length: 259aa    MW: 28455.1 Da    PI: 7.6709
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dr20585.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox59.36.2e-19110164256
                T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
   Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                rk+ +++k+q  +Lee F+++++++ ++++ LAk+l+L  rqV vWFqNrRa+ k
  Dr20585.1 110 RKKLRLSKDQSAILEESFKEHNTLNPKQKAALAKQLKLRPRQVEVWFQNRRARTK 164
                788899***********************************************98 PP
2HD-ZIP_I/II126.61.1e-40110199191
  HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 
                  +kk+rlsk+q+++LEesF+e+++L+p++K++la++L+l+prqv+vWFqnrRARtk+kq+E+d+e Lkr++++l+een+rL+ke +eLr +l
    Dr20585.1 110 RKKLRLSKDQSAILEESFKEHNTLNPKQKAALAKQLKLRPRQVEVWFQNRRARTKLKQTEVDCELLKRCCETLTEENRRLHKELAELR-AL 199
                  69*************************************************************************************9.54 PP
Sequence ? help Back to Top
Protein Sequence    Length: 259 aa     Download sequence    
MIANEDLGLS LSLSFFPPPL KQSQHHHHQW PHDFAAVGSN GLSHLPTSHL LPRSEGIDVN  60
QAPAGEREGD SEGEGDESSP NNSAVSSVSG KRDAGGGGQG SDDEDGDGSR KKLRLSKDQS  120
AILEESFKEH NTLNPKQKAA LAKQLKLRPR QVEVWFQNRR ARTKLKQTEV DCELLKRCCE  180
TLTEENRRLH KELAELRALK LSPHLYMHMA PPTTLTMCPS CERIQSPTGP AVPTRTPPWA  240
PIPLRPTLHL APAAPPPLS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1109115SRKKLRL
2159167RRARTKLKQ
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44910.18e-62HD-ZIP family protein