PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dr20773.1

Organism

Dioscorea rotundata

Taxonomic ID

55577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Dioscoreales; Dioscoreaceae; Dioscorea

Family

HD-ZIP

Protein Properties

Length: 291aa MW: 31827.1 Da PI: 9.4683

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dr20773.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	58.7	1e-18	136	190	2	56
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ ++tkeq Lee F+++++++ ++++ LAk+l+L rqV vWFqNrRa+ k Dr20773.1 136 RKKLRLTKEQSALLEERFKEHSTLNPKQKQALAKQLNLRPRQVEVWFQNRRARTK 190 788899***********************************************98 PP
2	HD-ZIP_I/II	122.2	2.6e-39	136	225	1	91
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 +kk+rl+keq++lLEe F+e+++L+p++K++la++L+l+prqv+vWFqnrRARtk+kq+E+d+e Lkr++++l+een+rL+ke +eL+ +l Dr20773.1 136 RKKLRLTKEQSALLEERFKEHSTLNPKQKQALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDFELLKRCCETLTEENRRLQKELQELK-AL 225 69*************************************************************************************9.55 PP

Sequence ? help Back to Top
Protein Sequence Length: 291 aa Download sequence
MDMAHQNDLI CDTGLVLGLG YGRRSTTSYT TTTTATATTA TTTTTTTTRS SSHRMSPAPA 60 TKLTLSLSDD ALGLKMDANN DGKTTRVSSP HSTLSSFSTA YHPSVKKEKD MVSEEAEVER 120 VLSSRASDEE DGGGARKKLR LTKEQSALLE ERFKEHSTLN PKQKQALAKQ LNLRPRQVEV 180 WFQNRRARTK LKQTEVDFEL LKRCCETLTE ENRRLQKELQ ELKALKFATP LYMQLPAATL 240 TMCPSCERIA GASEATKGLA GAGTGAGVGS SPFVIAPKPH FFNPFTHPAA C

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	185	193	RRARTKLKQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37790.1	3e-70	HD-ZIP family protein

Link Out ? help Back to Top
Ensembl	Dr20773.1