PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dr20789.1
Organism
Dioscorea rotundata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Dioscoreales; Dioscoreaceae; Dioscorea
Family M-type_MADS
Protein Properties Length: 193aa    MW: 22526.3 Da    PI: 7.6265
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dr20789.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF68.27.7e-223483150
               S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
     SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
               krie ++ rq tfskRr+g +KKA+EL vLC+++v  + fs+ gkly + 
  Dr20789.1 34 KRIEKDTARQATFSKRRKGFFKKANELAVLCGVQVTALAFSPAGKLYSFT 83
               79*********************************************995 PP
Sequence ? help Back to Top
Protein Sequence    Length: 193 aa     Download sequence    
MMEAKMDMKQ NQKQKQKQKQ KQKQNQGRQK VPIKRIEKDT ARQATFSKRR KGFFKKANEL  60
AVLCGVQVTA LAFSPAGKLY SFTANTSLDE LMHRCIANAG PSDLHYQQQQ QQQQQQQQQQ  120
QQEQQQQQQE QQQPWDMVGM NMDDHLGQVE MINYDDEFWN NWLNELMTDE TLNLPPLPDL  180
LLDPPTGSSS HHL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G14210.12e-19MIKC_MADS family protein