PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dr21098.1
Organism
Dioscorea rotundata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Dioscoreales; Dioscoreaceae; Dioscorea
Family M-type_MADS
Protein Properties Length: 313aa    MW: 35800.6 Da    PI: 4.3439
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dr21098.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF36.75.4e-12956149
               S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
     SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
               ++ie++ +rq+ fskRr+g+l KAe L+ L +   a+iifs  g+ +++
  Dr21098.1  9 EKIEEEKKRQICFSKRRKGLLSKAEKLCSL-GCHMAIIIFSAAGQAFTF 56
               579***************************.6899**********9999 PP
Sequence ? help Back to Top
Protein Sequence    Length: 313 aa     Download sequence    
MGKQKIKMEK IEEEKKRQIC FSKRRKGLLS KAEKLCSLGC HMAIIIFSAA GQAFTFGNPS  60
VHKIVSRYLG RTIEPPNQGL ENTEADDDDD NYDNDDDDDD DDDXXDDDDX DDDEQSEDTS  120
PMAVSLPEKK RVAKRRKLEN SEEEQQKQQL ACQDKVKNSP IINTSERLDN CIATVNDHHE  180
EEKNKNSTSL LALDNSKDEK INHVENQSAA ILIKEEKNNN CNTSSGSEEK EQMENNSNTC  240
RDELSACEKE GEENKQFFWN EVVENLNLDQ LLKLEEIIKE KQSKVVKLAD KILEERPLRL  300
CSWVDTDEEG DKS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24840.12e-14M-type_MADS family protein