PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dr21276.1

Organism

Dioscorea rotundata

Taxonomic ID

55577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Dioscoreales; Dioscoreaceae; Dioscorea

Family

C2H2

Protein Properties

Length: 146aa MW: 16823.4 Da PI: 10.6555

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dr21276.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	14.2	0.00012	39	61	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC+ Cg++Fs+ L H +H Dr21276.1 39 FKCKTCGRVFSSFQALGGHRTSH 61 89**********99998888777 PP
2	zf-C2H2	10.8	0.0015	94	116	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ Cg F L H+r+H Dr21276.1 94 HECSVCGLEFVMGQALGGHMRRH 116 78********************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 146 aa Download sequence
MKHNESEEMI KRRSVADILM LLSRQENIHK LKSVDQDVFK CKTCGRVFSS FQALGGHRTS 60 HRRQAAGLDH KRLIDMQLKX TTMMMKKKKN NKTHECSVCG LEFVMGQALG GHMRRHKPVS 120 VKKVLLFDLN LTPLENDNLN RAKYAD

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G28710.1	6e-29	C2H2 family protein

Link Out ? help Back to Top
Ensembl	Dr21276.1