PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dr21661.1
Organism
Dioscorea rotundata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Dioscoreales; Dioscoreaceae; Dioscorea
Family GRAS
Protein Properties Length: 428aa    MW: 48406.9 Da    PI: 7.5005
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dr21661.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS357.71.8e-109614271374
       GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNq 100
                lv+lL++cAeav+ +d e+a++lL+ l+ +a   g+++qR+a++f+++L  rl+  v+ l ++   ++++    se+  al+l +e++P+++f+h++aN 
  Dr21661.1  61 LVKLLISCAEAVACRDREQATNLLSLLRANAMVLGSSFQRVASCFVQGLTDRLTL-VQPLGAITCITPSP--ALSEKEDALSLVYELCPYIQFGHFIANT 157
                689***************************************************8.55555444444443..4778889999****************** PP

       GRAS 101 aIleavegeervHiiDfdis....qGlQWpaLlqaLasRpegpp.slRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLr 195
                 Ilea+ege+ vHi+D++++    +G QW +Ll++Las++ +pp ++RiTg+g+    s+++le++ge L  +A++lg+++ef   v  +le+l++e+L+
  Dr21661.1 158 SILEAFEGETLVHILDLGMTmslpHGHQWRNLLNSLASKATPPPlRIRITGIGP----SSDRLEKIGEELVIYAKTLGINLEFFS-VNVNLENLSIEQLK 252
                *****************986444479****************999*********....9**************************.7999********** PP

       GRAS 196 vkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreiv 295
                ++ +E+l+Vn++lqlh +++es    +   +vL+++ +lsP+v+v+veq+++hn++ Fl rf+eal+yysa+fds++  lp+ + +r+k+E++++++ei+
  Dr21661.1 253 INDNEVLVVNSILQLHCVVKESRGALN---SVLQMIHELSPRVFVLVEQDSSHNGPFFLGRFMEALHYYSAIFDSIDXVLPKYDTKRAKMEQFYFAEEIK 349
                *******************88877777...8********************************************************************* PP

       GRAS 296 nvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374
                n+v+ceg +r+erhe++ +Wr+r+++aGF+ +pl+   ++++k  l k     gy+  ee+gslvlgWk +++v++S+W+
  Dr21661.1 350 NIVSCEGPARVERHERVDQWRRRMSRAGFQVAPLKM--VTEVKQWLTKKTaCXGYTXAEEKGSLVLGWKLKSIVAASCWK 427
                **********************************75..555555555554499**************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 428 aa     Download sequence    
MPFKIGHKRS RNQESNSVNT SKKLRFRDHI RNFKKKFKEE XLLEETEVEE EDEDAAAGMQ  60
LVKLLISCAE AVACRDREQA TNLLSLLRAN AMVLGSSFQR VASCFVQGLT DRLTLVQPLG  120
AITCITPSPA LSEKEDALSL VYELCPYIQF GHFIANTSIL EAFEGETLVH ILDLGMTMSL  180
PHGHQWRNLL NSLASKATPP PLRIRITGIG PSSDRLEKIG EELVIYAKTL GINLEFFSVN  240
VNLENLSIEQ LKINDNEVLV VNSILQLHCV VKESRGALNS VLQMIHELSP RVFVLVEQDS  300
SHNGPFFLGR FMEALHYYSA IFDSIDXVLP KYDTKRAKME QFYFAEEIKN IVSCEGPARV  360
ERHERVDQWR RRMSRAGFQV APLKMVTEVK QWLTKKTACX GYTXAEEKGS LVLGWKLKSI  420
VAASCWKC
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14920.12e-73GRAS family protein