PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dr21662.1

Organism

Dioscorea rotundata

Taxonomic ID

55577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Dioscoreales; Dioscoreaceae; Dioscorea

Family

MYB

Protein Properties

Length: 182aa MW: 21522.8 Da PI: 8.6863

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dr21662.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	39.3	1.6e-12	26	73	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+WT +Ed++l++ + G ++W+++++ g R++k+c++rw +yl Dr21662.1 26 RGPWTIDEDQKLLNFIVNNGIHCWRLVPKLAGFMRCGKSCRLRWINYL 73 89****************************88**********97 PP
2	Myb_DNA-binding	33.1	1.3e-10	82	122	4	46
S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 ++ E++++++++ ++ ++ W+ Ia++++ gR ++++k+ w++ Dr21662.1 82 LSEAEEDQIIELHSRFRNR-WSMIASHFP-GRNDNEIKNDWNT 122 5899*************.*****.*******9986 PP

Sequence ? help Back to Top
Protein Sequence Length: 182 aa Download sequence
TRLDQCSLKL AKMGRKPCCE KIGLERGPWT IDEDQKLLNF IVNNGIHCWR LVPKLAGFMR 60 CGKSCRLRWI NYLRPDLKRE ELSEAEEDQI IELHSRFRNR WSMIASHFPG RNDNEIKNDW 120 NTRIKKRLKL IGIDPLTHKP IETTSTTTTT TKCEEKKDGK LLGDGVQEYY FHLMMDESEW 180 ER

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G14340.1	1e-73	MYB family protein

Link Out ? help Back to Top
Ensembl	Dr21662.1