PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dr21899.1

Organism

Dioscorea rotundata

Taxonomic ID

55577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Dioscoreales; Dioscoreaceae; Dioscorea

Family

SBP

Protein Properties

Length: 350aa MW: 39249.7 Da PI: 9.2568

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dr21899.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	129.5	1.2e-40	153	231	1	78
--SSTT-----TT--HHHHHTT--HHHHT-S-EE.ETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvl.vsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 +Cq++gC adls ak+yhrrhkvCe+hska+vvl + g++qrfCqqCsrfh lsefDe+krsCr+rLa+hn+rrrk+++ Dr21899.1 153 RCQADGCGADLSGAKHYHRRHKVCEFHSKAAVVLfAGGVQQRFCQQCSRFHVLSEFDETKRSCRKRLADHNRRRRKPKP 231 6*****************************9835679***********************************975 PP

Sequence ? help Back to Top
Protein Sequence Length: 350 aa Download sequence
MMNRHGSIDS YHVPSIMSFA GLEATSQKHQ QSSSIWDYET TTSTTTSATT TNANTHQNHP 60 YLFTNTTTTN NNTQFLDCTP QLFLPASNLP FYAPAPPPVI PNYCXDELIA VGGRIGLNLG 120 RRTYFSSGDA LALGRLWGRS RGXYAFGHHP PPRCQADGCG ADLSGAKHYH RRHKVCEFHS 180 KAAVVLFAGG VQQRFCQQCS RFHVLSEFDE TKRSCRKRLA DHNRRRRKPK PHQSSSSNSP 240 SQKTKPSPPK PSPKHPQESS KKEINHNHNH NHHHHQFKND PSLSLGGLER VNSYNNESMD 300 VSQQELFSND FFNNQSLLCS TSNEDSRSRD AGQXSLLQLG QAAMFSMDFI

Sequence ? help Back to Top

Protein Sequence Length: 350 aa Download sequence

MMNRHGSIDS YHVPSIMSFA GLEATSQKHQ QSSSIWDYET TTSTTTSATT TNANTHQNHP  60
YLFTNTTTTN NNTQFLDCTP QLFLPASNLP FYAPAPPPVI PNYCXDELIA VGGRIGLNLG  120
RRTYFSSGDA LALGRLWGRS RGXYAFGHHP PPRCQADGCG ADLSGAKHYH RRHKVCEFHS  180
KAAVVLFAGG VQQRFCQQCS RFHVLSEFDE TKRSCRKRLA DHNRRRRKPK PHQSSSSNSP  240
SQKTKPSPPK PSPKHPQESS KKEINHNHNH NHHHHQFKND PSLSLGGLER VNSYNNESMD  300
VSQQELFSND FFNNQSLLCS TSNEDSRSRD AGQXSLLQLG QAAMFSMDFI

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	212	229	KRSCRKRLADHNRRRRKP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G02065.1	4e-48	SBP family protein

Link Out ? help Back to Top
Ensembl	Dr21899.1