PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GAY32631.1
Organism
Citrus unshiu
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family C3H
Protein Properties Length: 325aa    MW: 34719.9 Da    PI: 10.2832
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GAY32631.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH215.8e-071431561427
                 --TTTTT-SS-SSS CS
     zf-CCCH  14 tCkyGdrCkFaHgp 27 
                  Ck+Gd+C+FaHg+
  GAY32631.1 143 GCKFGDKCHFAHGE 156
                 6***********96 PP
2zf-CCCH36.21e-11292316126
                 --S---SGGGGTS--TTTTT-SS-SS CS
     zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                 +kt+lC +fa+ G C +GdrC+FaHg
  GAY32631.1 292 FKTKLCGNFAK-GSCTFGDRCHFAHG 316
                 69*********.*************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 325 aa     Download sequence    
MDTRKRTKPE TGINANGVFK KSKHESESGV GSKSKPCTKF FRFIEVRTKY RKIMSITTDA  60
KALYIHKVIC RNITGVSTAG CPFGESCHFL HYFPGGYNAV AQMMNLPQAV PAPSRNMAVP  120
PPASNGPTVV KSRMCNRLNS AEGCKFGDKC HFAHGEWELG KPIAISHDDP RAFGAVPGRM  180
GGRYEPPPAP GPAASFGASA TAKISVDASL AGAIIGKGGV NSKQICRQTG AKLSIRDHEA  240
DPNLRNIELE GSFEQIKQAS AMVRELIVRI GPAHAKNPAT AGSAAHPLSS NFKTKLCGNF  300
AKGSCTFGDR CHFAHGAVEL RKTAI
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06770.15e-80C3H family protein