PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GAY32632.1
Organism
Citrus unshiu
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family C3H
Protein Properties Length: 290aa    MW: 30598.9 Da    PI: 9.9956
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GAY32632.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH19.51.7e-063356225
                -S---SGGGGTS--TTTTT-SS-S CS
     zf-CCCH  2 ktelCrffartGtCkyGdrCkFaH 25
                k ++C  f+ t  C++G++C+F H
  GAY32632.1 33 KSKPCTKFFSTAGCPFGESCHFLH 56
                7789******************** PP
2zf-CCCH21.25.1e-071081211427
                 --TTTTT-SS-SSS CS
     zf-CCCH  14 tCkyGdrCkFaHgp 27 
                  Ck+Gd+C+FaHg+
  GAY32632.1 108 GCKFGDKCHFAHGE 121
                 6***********96 PP
3zf-CCCH36.48.6e-12257281126
                 --S---SGGGGTS--TTTTT-SS-SS CS
     zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                 +kt+lC +fa+ G C +GdrC+FaHg
  GAY32632.1 257 FKTKLCGNFAK-GSCTFGDRCHFAHG 281
                 69*********.*************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 290 aa     Download sequence    
MDTRKRTKPE TGINANGVFK KSKHESESGV GSKSKPCTKF FSTAGCPFGE SCHFLHYFPG  60
GYNAVAQMMN LPQAVPAPSR NMAVPPPASN GPTVVKSRMC NRLNSAEGCK FGDKCHFAHG  120
EWELGKPIAI SHDDPRAFGA VPGRMGGRYE PPPAPGPAAS FGASATAKIS VDASLAGAII  180
GKGGVNSKQI CRQTGAKLSI RDHEADPNLR NIELEGSFEQ IKQASAMVRE LIVRIGPAHA  240
KNPATAGSAA HPLSSNFKTK LCGNFAKGSC TFGDRCHFAH GAVELRKTAI
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06770.15e-87C3H family protein