PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GAY32684.1

Organism

Citrus unshiu

Taxonomic ID

55188

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

HD-ZIP

Protein Properties

Length: 339aa MW: 37345.9 Da PI: 8.4965

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GAY32684.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	55.1	1.3e-17	167	221	2	56
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ +++keq Lee F+++++++ +++ LAk+l+L rqV vWFqNrRa+ k GAY32684.1 167 RKKLRLSKEQSAFLEESFKEHNTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTK 221 778899***********************************************98 PP
2	HD-ZIP_I/II	127.9	4.2e-41	167	257	1	92
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 +kk+rlskeq+++LEesF+e+++L+p++K +la++L+l+prqv+vWFqnrRARtk+kq+E+d+e+Lkr++++l+een+rL+ke +eLr +lk GAY32684.1 167 RKKLRLSKEQSAFLEESFKEHNTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCETLTEENRRLQKELQELR-ALK 257 69*************************************************************************************9.555 PP

Sequence ? help Back to Top
Protein Sequence Length: 339 aa Download sequence
MELALSLGDT SKPFSSKLSS KDLGFCMGLN GSSFNGKSEE KSASDHHPPP IQLDLLPFSP 60 VPRAHHHQPS SQFRFPWLNV VSTEPGPMDG AGGGGLDVNR FPVAMAQEEA DDGTTALSSP 120 NSTVSSFQMD HFCVRNGRSK RDLFDVEISH DRASSRASDD EENGLTRKKL RLSKEQSAFL 180 EESFKEHNTL NPKQKLALAK QLNLRPRQVE VWFQNRRART KLKQTEVDCE YLKRCCETLT 240 EENRRLQKEL QELRALKTSQ PFYMQLPATT LTMCPSCERV ATATTSAATA TTAAAATTAA 300 KGNNSNNKDS SVTLQLANKP ARLFPFSQLP QAQGAQSTS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	166	172	TRKKLRL
2	216	224	RRARTKLKQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G06710.1	2e-69	HD-ZIP family protein